Detail information of Zm00001d041796_circ_ig.1


General Information
CircRNA Name Zm00001d041796_circ_ig.1
ID in PlantcircBase zma_circ_007647
Alias zma_circ_0001171
Organism Zea mays
Position chr3: 138561387-138566133  JBrowse»
Reference genome AGPv4.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCATCGCGTTCGCGAAGCCAGCCGTAACAAACGCCGAGACCAGCCGTCCTCACCCGAACACCC
CTATCTCTGGGTATATAAAAAGCGAGTCCTCTACACctcctggctcatctaagtccacgtcgag
gaaaagaagagagagatcggagcatgcacacagagagagatcgaggagggcaggagggaaccgc
cgccaggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCTGGCTCATCTAAGTCCACGTCGAGGAAAAGAAGAGAGAGATCGGAGCATGCACACAGAGA
GAGATCGAGGAGGGCAGGAGGGAACCGCCGCCAGGGAACTCTGACTCGCTGTCGACCGAGCTTT
TGGGGATTGGTCAGGGACCCTCGCGAGCATGTCAGGGAGTCGCTTCGGCCTCAAACTGGCAGAT
GACATCGTGGGCTGGTTGGGTGGCACGGAATAACCACCACCGGTGGCCGCGCAAGAGGCCCTGG
ACCCTTCGACTGAAGCCTCGTCCGGGTAGGCATCTACCTTTCCTTCCCTTTTAGTTCTCGTTCT
TCAGTGCGTAATGTCGATCCACTGCGGGTTGGGTGCCCGGGACCGCCGTGCGAGGCTTCGCCGG
TGCGTGCGCCATTTCTCTGCACGGATGCGCCGCCACCCTGTGCCGGTGTGCTCGCCGCCGTGCG
TGGGTTTTGCGCCGCCGCCGTCGGTAGCATTTGGGAAGAAAGGCGCGCTACCGTCCGATGTCCA
AGGAACGACTCTGATTAGATCGCGCTTACCGGTTCGTTCAGTTTACGTGTCGACCGTCCGATCG
GGATCGGATGGTGGCTACTCGTGCTGGGACTCATTAAATCGGGACCATCGGATTGTTATCTGAG
GGTTCGCGCTGCGCGGGTGGCGAGATCTAATCTCGTGCGCCCATCTCCGATCGGGCGACTCAGA
TTTAATGATACCCCTTCGCGGGTACTTTTTGTTAAAGAGCCCCCGAGAAAATTACTAATCAATC
CGCCATCCAGAGAGTACTATTCTCTGTGTCTCGGAGATCTTACGCCCGAGACCCCTGCACTTTT
CATATTTTAGCGCCCAGTCCAGAGTAGATTAAAAATAGAGAAATGATATTAGAAATTCGTTTTT
AATACAAAAACAATTCTAGAAACTTGTAAAATGCATAGAAAATTCATTTTAGCTCCAAATTGAA
CCATTCTAATTTCTAAAATTTTGTAATAATATTCTCTATCATTTAATGTCTCTGTTTTGACATG
AAAACAGTAAGAAAATTAATTTGTCATTTAATTCTATTTCAAGCACATTAAATCTTAGGAAATT
CATAGTTAATTCATTTTAACTTCAAATTGAGTCATTCTAGTTGCAATAATTTTGTATTAATATT
GTTTATCACCTAGTACCTTTATTTAACCATGAAACTTGAATTAAAATTGCTCAATTGAATTAAT
CTATTCTAGGTGCTAAATGATTTTAGAAATTCATAACTCAATATTCGTAGCTCCGAATTTAGGG
GTTCTTGTTTCTACGATCTTGTAGCAACGCGTAGATCATAATTATACAGTTTATCCTTATGTTT
GGTGTAATGTTAATTTTGTCTATACACTGTTTGTTTGTAATGCTACGACTAGCGTGAGGACACG
TGTCATCTGAAGAGCAAGTTGGTACCTGGAATCTCAAGTGCCAGGCAAGTTGTGCCCTTGATCA
CTTCTTTTTACCCACTCATGTTCTAATTAATCATAATGATCTGCATAGGTTAATTTTGATGGGA
CCTAATAGGTTACCCTAGTTTGTCTATCTTTATACCTTGTTTACCACTGAACTTTTTGGGTAGT
ACTTGCTAGTGCTTTATGTGGTTTTGGGTATGAAGATACATTATTCATGATCACACTTTTATTA
TTTGTTTATTATTATTGTTCATGATAAGATCATTATGTTAATTGGAACATGGAGCGACCACCCG
GGAAAACAGTGCTACCACAAGGGTTTAATGGGACGCCCTTGGCTGATTAATTAGGAAAGCTAGT
GGAAGACTACCTTACCCGAAAGGGGCAAGGGCAGTAGGGGAGTGGTCAGTGTAGGGAGGCCCTC
GGGAGGATTTTGCTGCGATGGCGGTCCTGCAAGGGATTCCTGCATTGGAGCTTCCTATAAACTG
TAGCGGGTTTTCTGAAGCTAGTGGAACTTTGTAAAGGCCTCGTAGTGTTACCCTGCCTCGCCTC
CTCGGTAGAGGTGTATGGGAAGTCGCGATCCCTTGGCAGATGGGTAACATGACTTGTGGGTAAA
GATGCGCAACCTCTGCAGAGTGTAAAACTGGTATACTAGCCGTGCTCACGGTCATGAGCAGCTC
GGACCCTCACATGATTAATTTATGGAACTTAAATTCAATTTGTCATATGCATTGCATCGCAGGT
GATGTTGTTACTTTTGCTCTACTACTTAATTGGGTTGGTATTTACTTATACTTAGTAATTGCTA
ATAAAATTTTGACCAACTTTAAAAGCAATGCTCAGCTCTAACCATCCTCTTTGGTAAGCCTCAC
ACTTCACGTGAGCTCCCACCTTTGGCGAGTTCATGCACATTATTCCCCACAACTTGTTGAGCGA
TGAACGTATGTGAGCTCACTCTTGCTGTCTCACACCCCCCCCACAGGTCAAGAACAGGTACCGC
AGGATGAGGTGCATGGAGGATGCTGTGATGAGTTCGTGAGAGGTCTAGGCCGTCGTCTCCCAGT
CAACTTTGGGTTGCTGGACCGTTGTCTCCTTATAATGTAATTATTTACTTATTTGTATAGAACT
CCTGTTATGTAGTAAAGATGTGACATTCGATCCTGTGCCATGATTCATCATATGTGTGAGACTT
GGTCCCAGCACACCTGGTGATTATGTTTACGCCCGGGTCTTAGTGCCCCTGAAATCCGGGTGTG
ACAGAAGTGGTATCAGAGGAATGTTGACTGTAGGACGAAACCTAGATAGAACTGGATAACCCTT
ATCTACTTACCTTTACTACTCTGATTTATTTCTAAACTTCCCTTAATCTTTTCTCATCTAATTT
CCGCTATACTCTGATTATTCTTACCTTTTCCTTCTAAAGATAAATGTGGATTTCACACTTTGAA
ATCCTGTGCCTAAAGTGACTTTTAGGAATAGGAGACCCATTCTCAGGAACAAAAACAAAACTAT
TTTTTGGGTATCTATACGTTTGAGTGTTTGTTCTTATGATATTTGTCTGATTTGGATCTTTGAT
TGAGTGTGATGGGTTGTGGAGTAATGTCCACAATTACATCTACATGTACATATAGGGAAAGAAA
AAATGCTTATAAAAATAACTAGATAAACTAGGATATCCCTCATTAAAATATCTAGCCTAATAAT
ATCCATCTTATCTTAAAAGATTCTATCCGACACTCATAGATCCATCTTATCTTAAAAGATACTC
TATTACCTTAGTAGACTCATCTTATCTTGAAAAGATTTTATCTCATCCTAATAGATCTAACTGA
CCTCAAAAGATTCTACCTTATCCTTATGGATTCATCTTGCCCTAATTAGAATATTTATCCCACT
CTAGAGTAACAACCATGAGATAATCTAAAATTTATTTAGATCTTATCTAGTCTAAAATAGTCAT
ATCAATTTATTCTAGATCTGATCTAATGTGATATGTTAATCTAACCTAACAAAGTCTAACCTTA
AGTTGAGCTAATCTAATGTAAGTTACTTAAACAAGTTAGTTAATATTGGTAACATAGATTAGAT
CATATTCCTATAAATGGGTGCTAAACCTAATTTGGTGTCTTAGACCAACTCATTTGTGGAACCA
CCACAACCTAGCATATGTTATAGGATACCCAACCAATTTATCCCAAAAGCAAAGTAAACCTTGT
TGGGCCTACCCATCCCAACCACCGACAACTATCTTAACCATATGTCCTTAACACGGATGGCGAC
TCCAAGAAGAAAGGGCCAAAGAAGACCAACCACGTCAAGGGAGGATACACACCAACTCAAGTCT
TCAAGGATCAAGCGGGATCACGAGATGAGTCAAAATCCATAATCTAGGATGGAGTCTTTTCTTA
CCCTACGTTTTCTTAACCAAACCTATCTATGCTCTAAAAACATCTTCTATCCTACATAATAAAG
TGGACATACATATATATATATCCATGCTCTCCTAATCACTTACTACTGAAAAAGAGACTCTTGA
TTTTGAACTAATTAGAAACTAAAAGCTAAATTTCAAATCACTCTTTCAATATTCACTTTCTTAC
AAATCTCGAGGACGAGATTATTTTTAAGGGGGGTAGGATTTGTAATACCCAAATTATAATTTTA
AGACAAAAAAACCATCAATTATATATTATGTGGGTTTGCTATTTTTTTTGTTTTGTTTATTTTA
TTTAGCATTACGCATCATGGGTAAGAGAATAGCATAGTCAATAAACCAAAATGAATTTATGCAT
ACATGTTGGTATATTTTGTTTGTGCATTTAAACTTTGATAATGACTCACGAATTTGAAATTAAA
TATTAGAAAATTCGAAATTAGAAAAGAAATACAAAAAAAAAACAGCCCACGTTCATGCGAACAC
TGGGCCACACCCTACGTGATCAATGGACCCAGCTTCTTTGTTTTTTTTGTTGTTCTTATTATTT
TATTATATCATGCCGGAATGACGTCGTGCTGATGTCATGAATGAGGTCATCACGCAAATCACAT
CGCTCGGCTGTGCGTTTCTCCGTGTCGCTGCTGGGCTCTAGAAGCTTTCATCCTTCCGGCTTGG
AACTGAAACGCGAGCTCGGCGTAACCACCTCCCGGTAGATTCGATGCAGTATATATCTATCTCT
ATTAGCTTCTCGCCTCATCTGATCACCAGCGCTATCTTTCTCATCGCGTTCGCGAAGCCAGCCG
TAACAAACGCCGAGACCAGCCGTCCTCACCCGAACACCCCTATCTCTGGGTATATAAAAAGCGA
GTCCTCTACAC
Conservation Information
Conserved circRNAs NA
PMCS 0.63561248
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b