Detail information of Zm00001d023698_circ_g.2


General Information
CircRNA Name Zm00001d023698_circ_g.2
ID in PlantcircBase zma_circ_006064
Alias stemdr_test_circ_003367
Organism Zea mays
Position chr10: 16003750-16004549  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d023698
Parent gene annotation diphosphonucleotide phosphatase1
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues stem
Exon boundary   No-No
Splicing signals   TT-AC
Number of exons covered Zm00001d023698_T008:2
Zm00001d023698_T006:2
Zm00001d023698_T005:1
Zm00001d023698_T007:1
Zm00001d023698_T009:2
Zm00001d023698_T004:2
Zm00001d023698_T003:2
Zm00001d023698_T002:2
Zm00001d023698_T001:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCAAACTCACCCTTTAGTACCGTCAATCGGATCAAGCACCCAATGTCGTCCAGATGGACCTCC
CTCAGACTTCCCATCATCAATTGCAGAGAGTATACCcttcatcaagcagagccaatgcaatggc
atattggtcgcccctcaagaaactgattcaggtcataaaataaaaattcagataaggtatgaca
attattag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCATCAAGCAGAGCCAATGCAATGGCATATTGGTCGCCCCTCAAGAAACTGATTCAGGTCAT
AAAATAAAAATTCAGATAAGGTATGACAATTATTAGCAAGGCTGGCAAATCAGTGGTGTACGGC
TATCTATTAATTAAAATCTTGAATAGAAGGAAGCCAAACAGTTATTCATTATTATCAGGTTGCA
ATGAACCATCACCATAAATGCAATGCTTTTGAAAGGCATTCCCAGGACTTGTACACAGTGGAAC
ATGGATAAACACTGAATTGTATAAGCCTTTTGTAATCTAACTATTTAAGTATAGAAACCAAAAA
GATACATATAAGTTAACATTAGCATTTAGTATATATGCATTTGGAAGTACTCCATAAATCTTGC
ATCAATTTACAAAAGATAAATGAATGTATTAGTCTATTTTGCTGCAGTTCATAGACCTAAGAAA
ACAGAGATAAAACATTCAACTTGATATTAATAAAAAAATAATACATCATAATCCTCACACATTA
GAGATATAGGTTCATGAGACAAACAAGATAGTGGTGCCTGCTAGACTGCTACTTTAATTTCATC
AGAAATAATGTAGAAACACATTAAATCAGCAAGAATAGAGAAGATATAACATATGGTAATGCAA
ATGGTAGAAAGAATCCAACATTTATTAGAGTATACAAATATGAAACCTACTAGTTAAGTTGCCA
AACTCACCCTTTAGTACCGTCAATCGGATCAAGCACCCAATGTCGTCCAGATGGACCTCCCTCA
GACTTCCCATCATCAATTGCAGAGAGTATACC
Conservation Information
Conserved circRNAs NA
PMCS 0.158483448
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018