Detail information of Os01g0847700_circ_g.1


General Information
CircRNA Name Os01g0847700_circ_g.1
ID in PlantcircBase osa_circ_004825
Alias NA
Organism Oryza sativa
Position chr1: 36412851-36413494  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0847700
Parent gene annotation Aldo-keto reductase, Detoxification of reactive aldehydes, Abiot
ic stress tolerance (Os01t0847700-01)
Parent gene strand +
Alternative splicing Os01g0847600_circ_ag.1 Os01g0847600_circ_ag.2
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0847700-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCAAAAAGTGTGAGTGAAGAAAGGATAAAGCAGAACTTAGATGTTTATGACTGGTCTATTCCA
GAGGACTTGCTTGCTAAGTTCTCGGAGATTAAGCAGattcattggccattcagaaccaagaagg
gatccagcattggcaaacctgaaagctacttaccacctgacatcccatctacctgggcagcaat
ggagaagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTCATTGGCCATTCAGAACCAAGAAGGGATCCAGCATTGGCAAACCTGAAAGCTACTTACCAC
CTGACATCCCATCTACCTGGGCAGCAATGGAGAAGTTATATGATTCTGGCAAAAGTCGTGCCAT
TGGTGTGAGTAACTTCTCATCGAAAAAATTGGGTGACCTGCTTGCTGCAGCCCGTGTACCTCCA
GCTGTTGACCAGGTGGAGTGCCATCCTGGTTGGCAGCAGATGAAGCTGCATAACTTTTGCCAGT
CAACGGGCATTCATCTTTCTGTAAGTCTACATACTAAAAAACTGAGTCAATCCTCTGACTGATA
TTAGTAATGAACAAATGACACCTGTGGTTTTTCCTTTTCTGAAACCTACTGATCCTTTTCTTCC
TCCTTTTTTAGGCATACTCGCCGCTAGGTTCACCTGGTTCAACATTTATGAACGGCAATGTCCT
TAAGGAACCCATCATTATCTCGATTGCAGAGAAGCTTGGCAAAACTCCTGCACAAGTGGCGCTG
CGCTGGAACATTCAGATGGGTCACAGTGTACTCCCAAAAAGTGTGAGTGAAGAAAGGATAAAGC
AGAACTTAGATGTTTATGACTGGTCTATTCCAGAGGACTTGCTTGCTAAGTTCTCGGAGATTAA
GCAG
Conservation Information
Conserved circRNAs osi_circ_002538*
PMCS 0.546809537
Functional Information
Coding potential Y
Potential coding position 36412942-36413491(+)
36413437-36412983(+)
36412858-36413434(-)
Potential amino acid sequence MEKLYDSGKSRAIGVSNFSSKKLGDLLAAARVPPAVDQVECHPGWQQMKLHNFCQSTGIHLSAY
SPLGSPGSTFMNGNVLKEPIIISIAEKLGKTPAQVALRWNIQMGHSVLPKSVSEERIKQNLDVY
DWSIPEDLLAKFSEIKQIHWPFRTKKGSSIGKPESYLPPDIPSTWAAMEKLYDSGKSRAIGVSN
FSSKKLGDLLAAARVPPAVDQVECHPGWQQMKLHNFCQSTGIHLSAYSPLGSPGSTFMNGNVLK
EPIIISIAEKLGKTPAQVALRWNIQMGHSVLPKSVSEERIKQNLDVYDWSIPEDLLAKFSEIKQ
IHWPFRTKKGSSIGKPESYLPPDIPSTWAAMEKLYDSGKSRAIGVSNFSSKKLGDLLAAARVPP
AVDQVECHPGWQQMKLHNFCQSTGIHLSAYSPLGSPGSTFMNGNVLKEPIIISIAEKLGKTPAQ
VALRWNIQMGHSVLPKSVSEERIKQNLDVYDWSIPEDLLAKFSEIKQIHWPFRTKKGSSIGKPE
SYLPPDIPSTWAAMEKLYDSGKSRAIGVSNFSSKKLGDLLAAARVPPAVDQVECHPGWQQMKLH
NFCQSTGIHLSAYSPLGSPGSTFMNGNVLKEPIIISIAEKLGKTPAQVALRWNIQMGHSVLPKS
VSEERIKQNLDVYDWSIPEDLLAKFSEIKQ(+)
MFMTGLFQRTCLLSSRRLSRFIGHSEPRRDPALANLKATYHLTSHLPGQQWRSYMILAKVVPLV
*(+)
MNLLNLRELSKQVLWNRPVINI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017