Detail information of Solyc07g008000.2_circ_g.1


General Information
CircRNA Name Solyc07g008000.2_circ_g.1
ID in PlantcircBase sly_circ_002207
Alias NA
Organism Solanum lycopersicum
Position chr7: 2702769-2707366  JBrowse»
Reference genome SL2.50.38
Type   ei-circRNA
Identification method CIRI; find_circ
Parent gene Solyc07g008000.2
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Solyc07g008000.2.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAATCATTTTGGTGCTTTGTGGCTTTGATGGAGCGACTTGGACCAAATTTTAATCGTGACCAG
AACGGAGTGCATTCTCAGCTTTTTGCATTGTCAAAGggaaagttcttgtgagaaacataataag
aatgaagaagctgcaatgcgcgatgaaaatttagaggtctgttcataactgaggaacaatttga
cttgttga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAAAGTTCTTGTGAGAAACATAATAAGAATGAAGAAGCTGCAATGCGCGATGAAAATTTAGAG
GTCTGTTCATAACTGAGGAACAATTTGACTTGTTGAGAATGTTATTAACTTCTTGTAACTGGTG
TCTGTAGATAAAAACCTACTAGTTTTCAGCTTTTGTTGGATATGAAAGATTCGTCCACCAAGAT
GATCTTATTTAGTAGATGATGTTATATAGTGTATGTTAAACTGAAGTTTCTACCTTTTCTTTCT
TATTGTTCATCAAAATAAGTTTACTCTCTCTAACAATTTCAACTTTTAAATGAGATGGTCCCGC
ACTTAAACATGGTTATTGGAGCTGACAAGAAGGTCCTAGTTTCAAATCTCACTGCCACCAAAAG
CAAAAATATAGGCCATATGTTTGGCCCATTACAAAGAATCAGGCCTACACTTGTGGAGGTGCAT
CAAGACACAATATAATTAAAAATGTATTCTCTCTAACAACTTAAGTTTTATATGAGATGGTCAC
ATACTTCAACAAAAATCTATGGGTTATTCATGGAACTAAGTTTAGACGACGAAATTCTTCTAAA
ATGAATCAATCTGAAAATGATGAATGAAGTTGCACCATCTGGATACTACCTGTAGCTGTAGACT
GGACTGGACCATACCATCTTTTCTTTATATTATTATGAAGTTAAAACTGCATTTCTTTTTTTTG
GTCACGTAGTATTTTATAATTGCTTCCAGGTAAAATCCATAGAAATCAATTTTTATATACAATT
AATATCTTAGAAGTATAATAAGCAAATCAAAACCCTGTTCAGGTATTATGGGTGGATGAAGTAC
TTGACATATTTCAGAGCTACTACCCTTCAGTTGCTGTAATGACTGCTAACCTTAATAACAGTTG
TAATTTAGAAAAAATCCTTGAACTATTATGCTTGAGAGAGTTTTTCAGATAACCATTTTTTGTC
TAGGCTACTTAATTTGTATCTAGCTCAACAACCTGAGTTATTTTGGAAATATGCCCCCTATTTC
TCTCTCTATATTTCTTCCTAGAAGTTAGTAAGTGAATTTAGGGTGTGTGTGACAGGTTCATCAA
CACTTTTTCTTTCTTCTGCAGTATGACTATGACAAATTATCACTAGTATGGGGAAAACCGCGCC
AGCCTCCGTTGGGATCAGAAGAGGTATAAGACTTGTCATTGTTAATGATTTTAAGGAAACATTT
TTGAACTGTTGGCATCATGCCAGTGCTAGGTCTAGTGAGCCTTTTCAGCCAGAAGCTCAGGTCC
ATCTCATTTTGTTGTTGCAGGCTTAACTAACTAGGTAGAACTATCCCCTTTTTGCAATCTTAAA
TTTCTAAATGAGGTGATCACACTATTTGATATGGAATCAAAGTAGGTTTTTAAGTCTCAGTGCA
ACCTATTATCAAGTTTCCACATGCTTGACTCAAGAAAATAAATAGGCCTACTTCATTATTTAGT
GGAGCCTGTGGTTATTTAGTGTATTATTGTGTGTGGCTTTTGCAGCTAATGTCCACATCCCTTA
CTTCATTATGTTTTTCCACAGTGGTCCACCTTTTTGGACTCTGAAGGTAGGATCGTAGACTCGC
AGGCACTAAGAAAGAGGATCTTTTACGGCGGTGTGGAGAAAGGTCTGAGGAAAGAGGTATGTTC
TTGTAGCCATCTACCACTACTAAAAAACCCGGAATTAGCTACCAATTTCGTCACTAGTCCGTCA
TTATTTCGCTTGTAGCTAACAAAAATTCGTCGTTAAAGAGGCTTAGCAACGGATATGTTGTTTA
GCTATGTAATTTTGTCCGTCACTAAAATCCAGCATTTTTAGTAGTGTACCCCTCTCATGATCTG
TCTAAGTAGGAATAATATACTTCTGTTTGTCGTTGTGGTTCCAGGTCTGGAGATTTCTGTTGGG
ATATCATTCGTATGATTCAACTTATTCCGAGAGGGAATATCTCGCGTCTATCAGAAAGTCAGAG
TATGAAACAATAAAAAACCAGTGGAAGGTTTGTGTAGCTCTCTCTAGACCTTTTTCCGGGGTTG
GGACCCAGGAAATTTCTGTTTCCTTCTAAACCCCTATTAGTTTATTTCGTTTGATTGGGGTGTG
TTTGGTATGGGAGAGAACATTTTCCATGGATAATATTTTCCTAGAAAATGTTCTGTTAGAAAAT
AAGTGTGCTTCTAGTTTTCCATAAATAAGCAAAAAAATATTATCCCAGGAGCATTTAGACGTAA
TCTAGCAAAACACCATGTGCGCAGGATGGGGTATGGAGTAGGAGTTCGGGTGGTGATTGTGTAT
GGGATGGGAATTGTGGATGTTGGGTGGGTTGGGAGGAGTTAATGAACTTAGAATGTCACTGCTG
GAACTTTTTTCCCTACTTCCCTTAGAGAAGTCGTTTCCTCAAATTTAAGGAGCTTGTTTCCTAG
AGAAAATGTTCTCCAAAATTTTTTGATCAACCAAACATGAGAAAATTGAAAAACATTTTCTATT
CTCCCTCATACCAAACACACTCTAAATGCCTTCAGTGATTAAAATTGTTGAATAAGCTACCATC
TTATATTTAGCTCATTGCAAACTGATGAGATTCTTGTTACCATCATCATGATGCTGTTAGGTTT
CAGTGTTTCTATTTTCTCTTTTGATATCTCTAGCTTTGTCCTTCAGTTGACACAGAACGATTTT
ATCTCAAATTTCATGTGAATACTGCCATCCCTAGTCTCTACTAGAATTATATGATGCCAATGAT
AAATTAAATATTGAAACGGCGAATAGATATTCGTAGGGATAGTAGCAGTATTTTTATGTGTTCG
CGTTGGTGTTCTTGAAATAGGACATGAAGGAGCTTGGAGATAATTATCCTCTGAAAGTTTGTTC
GAAGTGTTTAACAATCTGTAGTACTCTTCTGGGTTAAAGGACTTGAGTCATATATTTTTGGGAG
TTTTACTTCTGATATTCCTCTAGGGAAGTTGATCCCCCCAATTTTTCTTTTCTCCAAAGACCAG
TTTTTCAGATAAAAGAATCAAATCATTTTGTTGTGGAGTTGTGCTTTCCTGTTCCTTATGGTAA
ATTAGTTCCCCTATTTTTCTCTCCTCCAGAGAGAACCGATGATAAGAAAATGGCTTTGAGGTCT
TTTTGGTGAAACTAAGCTTTAAATTAAATATTCATGTTTATGTTGAATCTGTTTATGCAGAGCA
TCACTAAAGAGCAGGCAAAGAGATTTACAAAATTTAGAGAAAGGAAAGCTCTTATTGAAAAAGA
CGTGGTAAGTATCGAATTAGTCCAGCCTTTTGGGCCTAAAAATGACTTCCATAAGAGAGGTTGA
GAGGCAGTATGCAGCTCTTCACATCTGAGCCATTAACTACCAGTCTTACTTTTGTAACATATTA
TTTTGGTTATTGTAAAATTATGACACTTCTTATTTCTCTTCTTCCCTTTTCCTTTTTCTTTAAA
TTGATCTTGAAGGTTAGGACTGATAGGTCAATTGCATTCTATGATGGGGATGATAATTCTAATG
TGAAGTGCTTGCGTGACATACTTCTCACTTACTCATTCTACAACTTTGACCTCGGTTACTGTCA
GGTAACTGCGTTACATTAATTGGTCGCTATTTGCTTATGTGCTCATGCAAAATTAAATCAGCTA
GGTGCATGATTTTTCCGATTTCTCAAACATTGAAAATCTTCAGGCTTCCTGCCTCCCTTTCTCT
TTTTCTTTCTCTTAGATGTTCTGTTTCACCATAGGGAGATTTGACCTTGAAACATTGTCTATCT
AGGCAGCACCGAGTCCAACCTTGATGTTAGTTTTCTGCAGAGATAGATCCCTGTTTCTGGTAGT
ATAATGGTGTGAAATAAAATAATAAGATTCAGAAGCTTGAATATTTTTTAACAAGAGACTATGC
ATTCAAACTGAGAATCTTATTTCTTCGGAAAATCTGCTGCCTAAACCATGGTGCACAGAGTTAC
ACAGTACATGTGTTGGTGTGAGGTAGCAAATATCTTGTAGATTAAGGTGTGTGAGAGCTGGTTG
TCTGGTCCCGACCCCACCTTTATTTAAAATAAAAAGGTAGCAGCGTAATAATGATGTTCTTATG
CAGGTTTTTTGGTAACTAACATAATTTACTATCCAATGTCCTAATTGTTTACCTTCTATTCAAT
CTTTTCGGAAGCAATTGTCATACTTTTAGTTAACGAAATGGTCTCACATAATGCAAATTATAGT
ATCTCATATTACCAGCCTGAGATTACTCTGTTTCCCTTTTATATGTAATGTCTCTCTAGAGAAT
TCAATTCTTAGTGGATGATACTGGTGGAATCATGCTTTCTATGATTGATCTATGCTGTTGGTGC
CTTTGTGCTCCAGTATGCTGTTTACGACTTGGTGCAAGTTCCTTTTCTTTCTTGGTTGATAACT
TTTTGTTGAACTCTTTTATTCTCGACTTGTAGGGTATGAGTGATCTTCTTTCACCAATATTGTA
TGTGATGGGAGATGAATCACAATCATTTTGGTGCTTTGTGGCTTTGATGGAGCGACTTGGACCA
AATTTTAATCGTGACCAGAACGGAGTGCATTCTCAGCTTTTTGCATTGTCAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.139873028
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Yang et al., 2020