Plant Circular RNA Database

Detail information of 5_circ_ag.7

			
						 General Information
					
						CircRNA Name
						5_circ_ag.7
					
						ID in PlantcircBase
						ath_circ_043286
					
						Alias
						5:20202958-20207065
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 20202958-20207065  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							AT5G49730_circ_g.1 5_circ_ag.2 5_circ_ag.3 AT5G49730_circ_g.4 5_circ_ag.5 AT5G49730_circ_g.6 5_circ_ag.8 5_circ_ag.9 AT5G49740_circ_g.1 						
					
						Support reads
						1/1/1/2
					
						Tissues
						seedling;leaf;flower
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	5_circ_ag.7
ID in PlantcircBase	ath_circ_043286
Alias	5:20202958-20207065
Organism	Arabidpsis thaliana
Position	chr5: 20202958-20207065 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	find_circ; CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	AT5G49730_circ_g.1 5_circ_ag.2 5_circ_ag.3 AT5G49730_circ_g.4 5_circ_ag.5 AT5G49730_circ_g.6 5_circ_ag.8 5_circ_ag.9 AT5G49740_circ_g.1
Support reads	1/1/1/2
Tissues	seedling;leaf;flower
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCATCTAGAGGACTTGATGAAACACTGAAAGGATGCCACTGTAACCAAGACAGTTCCTTCACTT
GAAGAAAGATAAAGCTAAGCGCGTTGTATCGCATATttggtggttttgaaaggactagttcaag
agttccacaaggtaaactctttgcagagattacatcaacagtccttcttgattggcagaacctc
aagaagcg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							TTGGTGGTTTTGAAAGGACTAGTTCAAGAGTTCCACAAGGTAAACTCTTTGCAGAGATTACATC
AACAGTCCTTCTTGATTGGCAGAACCTCAAGAAGCGGTCTAGAATGAAAAGAAATATTCCTCCA
GCAACTATACTAAACATGTAATCACCAACATGAAGTGCCAAGAACACAATAAAGACGATGTATA
GTTGATGTGTGTAGAAGAAGAGCTCAAAGTAATTCTTTCTCACGGTGTGAAGCGATGTGACCCA
CATCAGTAAACCCGCCACTAGACTGATAACTCCGGGTAAGATAGCAATTCCGATAGCATTCCAT
GAAAATATCTGAGAGGAGTAAGTAGTTGATGATGATGAAACTTTACAATAGAAAATAAGAAGAT
AAAATTGTGACTTATAGAGTATAGACCTATCTTGAACCGATGATCGACACTATACTATAGTAGA
TAAACTAGGCTATACTATTATGTCAAGATTCAATGATGTTGTAGGATCTTACAAGCTCTAAAAG
TTGACCTTGAATGATCCATCCAACAACATAACAGAGGCCATGTAAGGAGAAGAAAGCCATGGTG
ATATGACCAAGCCAAACATGATATCTTGTAGCATGTTCAAAAGGGATATCGATAAGACGGAGAA
GAATGGAACCTCTCGAGATTGGAAGAAACAAAAAAACCATACACAACAATCCAATCATTCCTAA
ACGCAGACCCGTTACCTCCAACAGAAGAATACTGAAAATACACACACACAAAACTAATGATTGG
AATGAGAAGGAAAAAGACAAAGATGGGAAAAAAAAAGGAAGAGTTTTAAGAACCTTCGATTCTT
GGGAAGGACGTGGAAGCGTTCAAGAAGGTCAAGATTCCTCAAGGTATAAGCATAGATAGACCAA
AGGAAAAAAACAGAGAAGACCATAATTCCAAGAAACTCAGCTGCAGAAACAACTCCAAATGGTC
CATCCACAAGAACAGGGAATGTCCATAGCCTAAACCTCGGGAATTTCGATATCTTCTTCCTTCA
CAATCATCATGACACACACATTTATGCAAGAACAAAAATTGATACAACCAAAAGAATGCAATTG
GGGATATTATTACACGTACTTAGTGAAGACCTTGTCTTCCCCGGAGATAATGAGATAGAGAGAA
GCTAAGACAGAGATGACAAGAATCGGACAACTGAAAATCAAGAACATGGTTCCTGCAAATTTAG
ACAATTAAAGGATGAAATTAGTTACACTTTTTGGACATGTTTCCGTAGAAAGCAAAGCATCTGC
TCGTTAATGTAACCTGTGGTGCCTAGGAAAGTCTTGGAGGAGACAAATGTGAGGAAATCATCAC
CGAGTTGTTCAGGGTACATCATCATAAGAAAAACAACCCAAGTCACAAAAATCATAGACATTAC
AACTTTCAATATCCATTTCAAAGATGAAGTAATCACAGATGATGATGATGATGAGTCCTTGGAC
AAAAGAGGGGTTTCATAATCATCCATCTTTATTTGAATTTCCACTTCTCAGTGTTGTGATGAGA
AGTTGGCTCAGAAGCAGCATCGGCTTTTAAGGTGGCGTTACTAGAGATAAACTAATAAGATATT
CTTAGAAGAGTCAAGTAAAATTTTCTGGACCATTGAGGTTTCTATCATTCTCATTTATGAAAGA
TTCCTTCGGACAACAATCCTAGTACACAATAAAAAAAACTATAAAAAAAAATGAGAGTGTCATT
AACACGTGAGAGTAACGTACTTGGGAGAGAGTGTCACGTTAGGTTGATTTCAACCACAATTAAG
GGTAAGGTGAGAGACTGAGAGTACTTACTACTTTAGTATAGATAAGATGGTTATTATGACGACT
ATGATGGTTATTGGATAAGCTTACATTACCTGAATCTGAACATATAGAATTTCAACATCATTCG
GATTAGCTCGAAAGAAACATTATTCGGTTTCCGCGTTCAAGATCCAGCAGAGAGATAAATTTGC
AAAGTTTCACTGTTAGATTGTTTCTGGTAAATGACACTATCTAACAATGTGTTACGTTAAACAA
GAATAATCGACTATCATGAAGTTGTATCAATCTCGAACACACAAGTTATAATCAGTCCAAGGAA
AAACTTAGATGTATATAGTCAAAAAAATTCTTCATTACACTTTTAAGTAACCGAAACAAAATCC
AATAACAAATAAAAGTACCACTTAGACTTAGCTACGATTTACATGTCAACAAAAGAACACTAAG
AAATTATAATTAAGTCTCATGAAGTTGTATGTGTAGACAAAAAAGAATTATAATCAGGCCTAGA
GAGAGTAAAGTTTGATTTCAACCACACTTTAGGGAAGGTGAGAGTATTGACTATTGAGTATGGA
TAAGATGATTATAATGACGATTGTAATGGTTGTTGTACCATTATATTTATATATTAAGTTATTA
ACTCAAAAGAACTAAGAAATTGCTATCATGAAGTAGCATCAATCTCAAAAATTAGTTAAAGTTG
TTTCCATAATACATACAGACTGTGATTATATAAATTATATGCATCGATAATATATCTTCGAATT
TCCATAATGTTCTTTGGCCTTGAGAGCATCGTTAGAGATCGAAACTGTGGCTGTTGAAGTGGAA
AAGAGGATGATTCGCCGATCGCCAGATGCTATGTGACCGTATTTCTTTGGCTACGGTCGTCTGA
AGAGTCGCTGGACCGCATACTATCACTCCAACATCCACACTCCCCCATTTCCCATTCAATGACT
CAAATATCTCTGCAATTACAAAATAAAAATATTACATGAACCAATCAAAGATTTAACTTAACCG
AATCGAGCCAAATATCTACACCAAAAGTCGGATTCAAGAACCGAACGAAACCGTGTCAAACCGT
TCCGAATGATTTCAGTTTCTATAATTTTATAAATAAAAAAACGAGATAACTGGACTTGACACCG
CTAATTTTGTAGTGTATACCTCTAAAGGCCGGTCTGGTGCCATAACGAATAGTGGTGTAATTCT
GGACATCTTCTTCTATTGCCAAGCCCTTAAGCTCTGCTGCAGATGGATTATGGGTTTCTTCTCC
ATTCAAATCTACCTTGTCGTTGCCATTTGCTTCCACTTCACCGGTTTTGTGTTCCCAGCGATGC
CAGAAAACAACCACAAGACCTCCAAAAATCAACACACTTGCAACCATACAAACAACAAACAGAA
GTCCCTTGTACCACCATGTTGTTATGTTGTACTTGTTTATGTAAAAGATGTCCACCAATGTGAT
CATTGCAATAAACCCAATGGTGGAGATAATTAGATAGAGTCCAGACCATATGTTATCCCCTGTA
CCAACTAAAACCGACATGGAACATCCGTTGGTCCATGGTGTTTTGACAGAAGGATGCACCACCT
TGTGAACCATCCCATCTTCCTGTATAACCATGGAACATTGAAGAGTTCAAAAACTAAGTAAGGC
CTATTGCAGCTCCCAAAAGAGTTATGTAAGACTTACCAAGCAAGGCTCGGATTGTCGAGTGACA
TATATGTGAATCTCAAGGTTTAGTTTCTTAGAGAAGAAATGGCAAATGGAAGGTATGTCAATTG
CTGAGAGCAGAGAGAGCTCGTCTGAGTTTTTAATGGCCCATACAACTAAAACCTTACCAGGTAA
ACAATCTTTCCCATCTCTTTTACGGTGTAGGATATCGCTTAAGATGGCAAAAAAAGGCGTAATC
CCGATTCCTCCTGCTACTAATACCAGGTTCTCATACCTGCACTCGCAAATAAAGCTTTCTTGAG
TAAAGCTAAAGCTTACTGTATTGAAACAATTCATGTAGACGAAATGCATTACGCTAAGTGGTAT
GGAGATTCATGGCCATAAGGTCCCTCCACACAAGTTGTGATTTTGGGATATGACTCAGGAGAAA
TAAGCTGGTCTTGATTTTCTGCCTCATATAGAGTTGACAATTGATCCCTAAGCTTTGCAGTCCA
TCCACCAAGAACTTTTATAAGAACCGCAACATGATGGTTCCCATCTAGAGGACTTGATGAAACA
CTGAAAGGATGCCACTGTAACCAAGACAGTTCCTTCACTTGAAGAAAGATAAAGCTAAGCGCGT
TGTATCGCATAT
						
					

			
		

Sequences
Splice junction sequence	CCATCTAGAGGACTTGATGAAACACTGAAAGGATGCCACTGTAACCAAGACAGTTCCTTCACTT GAAGAAAGATAAAGCTAAGCGCGTTGTATCGCATATttggtggttttgaaaggactagttcaag agttccacaaggtaaactctttgcagagattacatcaacagtccttcttgattggcagaacctc aagaagcg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TTGGTGGTTTTGAAAGGACTAGTTCAAGAGTTCCACAAGGTAAACTCTTTGCAGAGATTACATC AACAGTCCTTCTTGATTGGCAGAACCTCAAGAAGCGGTCTAGAATGAAAAGAAATATTCCTCCA GCAACTATACTAAACATGTAATCACCAACATGAAGTGCCAAGAACACAATAAAGACGATGTATA GTTGATGTGTGTAGAAGAAGAGCTCAAAGTAATTCTTTCTCACGGTGTGAAGCGATGTGACCCA CATCAGTAAACCCGCCACTAGACTGATAACTCCGGGTAAGATAGCAATTCCGATAGCATTCCAT GAAAATATCTGAGAGGAGTAAGTAGTTGATGATGATGAAACTTTACAATAGAAAATAAGAAGAT AAAATTGTGACTTATAGAGTATAGACCTATCTTGAACCGATGATCGACACTATACTATAGTAGA TAAACTAGGCTATACTATTATGTCAAGATTCAATGATGTTGTAGGATCTTACAAGCTCTAAAAG TTGACCTTGAATGATCCATCCAACAACATAACAGAGGCCATGTAAGGAGAAGAAAGCCATGGTG ATATGACCAAGCCAAACATGATATCTTGTAGCATGTTCAAAAGGGATATCGATAAGACGGAGAA GAATGGAACCTCTCGAGATTGGAAGAAACAAAAAAACCATACACAACAATCCAATCATTCCTAA ACGCAGACCCGTTACCTCCAACAGAAGAATACTGAAAATACACACACACAAAACTAATGATTGG AATGAGAAGGAAAAAGACAAAGATGGGAAAAAAAAAGGAAGAGTTTTAAGAACCTTCGATTCTT GGGAAGGACGTGGAAGCGTTCAAGAAGGTCAAGATTCCTCAAGGTATAAGCATAGATAGACCAA AGGAAAAAAACAGAGAAGACCATAATTCCAAGAAACTCAGCTGCAGAAACAACTCCAAATGGTC CATCCACAAGAACAGGGAATGTCCATAGCCTAAACCTCGGGAATTTCGATATCTTCTTCCTTCA CAATCATCATGACACACACATTTATGCAAGAACAAAAATTGATACAACCAAAAGAATGCAATTG GGGATATTATTACACGTACTTAGTGAAGACCTTGTCTTCCCCGGAGATAATGAGATAGAGAGAA GCTAAGACAGAGATGACAAGAATCGGACAACTGAAAATCAAGAACATGGTTCCTGCAAATTTAG ACAATTAAAGGATGAAATTAGTTACACTTTTTGGACATGTTTCCGTAGAAAGCAAAGCATCTGC TCGTTAATGTAACCTGTGGTGCCTAGGAAAGTCTTGGAGGAGACAAATGTGAGGAAATCATCAC CGAGTTGTTCAGGGTACATCATCATAAGAAAAACAACCCAAGTCACAAAAATCATAGACATTAC AACTTTCAATATCCATTTCAAAGATGAAGTAATCACAGATGATGATGATGATGAGTCCTTGGAC AAAAGAGGGGTTTCATAATCATCCATCTTTATTTGAATTTCCACTTCTCAGTGTTGTGATGAGA AGTTGGCTCAGAAGCAGCATCGGCTTTTAAGGTGGCGTTACTAGAGATAAACTAATAAGATATT CTTAGAAGAGTCAAGTAAAATTTTCTGGACCATTGAGGTTTCTATCATTCTCATTTATGAAAGA TTCCTTCGGACAACAATCCTAGTACACAATAAAAAAAACTATAAAAAAAAATGAGAGTGTCATT AACACGTGAGAGTAACGTACTTGGGAGAGAGTGTCACGTTAGGTTGATTTCAACCACAATTAAG GGTAAGGTGAGAGACTGAGAGTACTTACTACTTTAGTATAGATAAGATGGTTATTATGACGACT ATGATGGTTATTGGATAAGCTTACATTACCTGAATCTGAACATATAGAATTTCAACATCATTCG GATTAGCTCGAAAGAAACATTATTCGGTTTCCGCGTTCAAGATCCAGCAGAGAGATAAATTTGC AAAGTTTCACTGTTAGATTGTTTCTGGTAAATGACACTATCTAACAATGTGTTACGTTAAACAA GAATAATCGACTATCATGAAGTTGTATCAATCTCGAACACACAAGTTATAATCAGTCCAAGGAA AAACTTAGATGTATATAGTCAAAAAAATTCTTCATTACACTTTTAAGTAACCGAAACAAAATCC AATAACAAATAAAAGTACCACTTAGACTTAGCTACGATTTACATGTCAACAAAAGAACACTAAG AAATTATAATTAAGTCTCATGAAGTTGTATGTGTAGACAAAAAAGAATTATAATCAGGCCTAGA GAGAGTAAAGTTTGATTTCAACCACACTTTAGGGAAGGTGAGAGTATTGACTATTGAGTATGGA TAAGATGATTATAATGACGATTGTAATGGTTGTTGTACCATTATATTTATATATTAAGTTATTA ACTCAAAAGAACTAAGAAATTGCTATCATGAAGTAGCATCAATCTCAAAAATTAGTTAAAGTTG TTTCCATAATACATACAGACTGTGATTATATAAATTATATGCATCGATAATATATCTTCGAATT TCCATAATGTTCTTTGGCCTTGAGAGCATCGTTAGAGATCGAAACTGTGGCTGTTGAAGTGGAA AAGAGGATGATTCGCCGATCGCCAGATGCTATGTGACCGTATTTCTTTGGCTACGGTCGTCTGA AGAGTCGCTGGACCGCATACTATCACTCCAACATCCACACTCCCCCATTTCCCATTCAATGACT CAAATATCTCTGCAATTACAAAATAAAAATATTACATGAACCAATCAAAGATTTAACTTAACCG AATCGAGCCAAATATCTACACCAAAAGTCGGATTCAAGAACCGAACGAAACCGTGTCAAACCGT TCCGAATGATTTCAGTTTCTATAATTTTATAAATAAAAAAACGAGATAACTGGACTTGACACCG CTAATTTTGTAGTGTATACCTCTAAAGGCCGGTCTGGTGCCATAACGAATAGTGGTGTAATTCT GGACATCTTCTTCTATTGCCAAGCCCTTAAGCTCTGCTGCAGATGGATTATGGGTTTCTTCTCC ATTCAAATCTACCTTGTCGTTGCCATTTGCTTCCACTTCACCGGTTTTGTGTTCCCAGCGATGC CAGAAAACAACCACAAGACCTCCAAAAATCAACACACTTGCAACCATACAAACAACAAACAGAA GTCCCTTGTACCACCATGTTGTTATGTTGTACTTGTTTATGTAAAAGATGTCCACCAATGTGAT CATTGCAATAAACCCAATGGTGGAGATAATTAGATAGAGTCCAGACCATATGTTATCCCCTGTA CCAACTAAAACCGACATGGAACATCCGTTGGTCCATGGTGTTTTGACAGAAGGATGCACCACCT TGTGAACCATCCCATCTTCCTGTATAACCATGGAACATTGAAGAGTTCAAAAACTAAGTAAGGC CTATTGCAGCTCCCAAAAGAGTTATGTAAGACTTACCAAGCAAGGCTCGGATTGTCGAGTGACA TATATGTGAATCTCAAGGTTTAGTTTCTTAGAGAAGAAATGGCAAATGGAAGGTATGTCAATTG CTGAGAGCAGAGAGAGCTCGTCTGAGTTTTTAATGGCCCATACAACTAAAACCTTACCAGGTAA ACAATCTTTCCCATCTCTTTTACGGTGTAGGATATCGCTTAAGATGGCAAAAAAAGGCGTAATC CCGATTCCTCCTGCTACTAATACCAGGTTCTCATACCTGCACTCGCAAATAAAGCTTTCTTGAG TAAAGCTAAAGCTTACTGTATTGAAACAATTCATGTAGACGAAATGCATTACGCTAAGTGGTAT GGAGATTCATGGCCATAAGGTCCCTCCACACAAGTTGTGATTTTGGGATATGACTCAGGAGAAA TAAGCTGGTCTTGATTTTCTGCCTCATATAGAGTTGACAATTGATCCCTAAGCTTTGCAGTCCA TCCACCAAGAACTTTTATAAGAACCGCAACATGATGGTTCCCATCTAGAGGACTTGATGAAACA CTGAAAGGATGCCACTGTAACCAAGACAGTTCCTTCACTTGAAGAAAGATAAAGCTAAGCGCGT TGTATCGCATAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.766545776

Conservation Information
Conserved circRNAs	NA
PMCS	0.766545776

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of 5_circ_ag.7

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