Detail information of AT1G68890_circ_g.7


General Information
CircRNA Name AT1G68890_circ_g.7
ID in PlantcircBase ath_circ_009256
Alias NA
Organism Arabidpsis thaliana
Position chr1: 25901723-25904599  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT1G68890
Parent gene annotation Protein PHYLLO, chloroplastic
Parent gene strand +
Alternative splicing AT1G68890_circ_g.6 AT1G68890_circ_g.8 AT1G68890_circ_g.9 AT1G68890_circ_g.10 AT1G68890_circ_g.11
Support reads 10
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G68890.2:10
AT1G68890.1:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACTGGATTACCAGTGGCACTTGATGAGACTCTTGATGATTTTGAGGAATGTCCTCTGCGTATG
CTTACCAAATATACGCACCCTGGAATAGTTGCTGTTattgcccgggaaatgtcatttcaaatat
ctgctgaaagctccctgactgaaccttacgttgcacatatgctttctaaagcactaacttctaa
atctgctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTGCCCGGGAAATGTCATTTCAAATATCTGCTGAAAGCTCCCTGACTGAACCTTACGTTGCAC
ATATGCTTTCTAAAGCACTAACTTCTAAATCTGCTCTTTTCATCGGGAATAGTATGCCAATAAG
GGATGTGGATATGTATGGATGTAGTTCAGAAAATTCTTCTCATGTGGTAGATATGATGTTGAGT
GCAGAACTACCATGTCAATGGATACAAGTAACTGGAAATAGAGGAGCTAGTGGCATTGATGGGT
TGCTCAGCTCGGCCACTGGCTTTGCTGTAGGATGCAAGAAGAGAGTAAGATTTTAAATGATTTT
TTCCCCCTTTTATGCGTGAAGAAGTATCAGAACCATTTACTCATGTGTTTTGTTTACAAAATAA
AAAATCAAATTTCCTGATTGGTCAAACACCGTATATCAGGTGGTCTGTGTGGTTGGGGACATCT
CTTTCCTTCATGATACAAATGGATTGGCGATTTTGAAGCAGAGGTAGCCCTTTCCTCTATTTTA
TTGTTGTAGTTTCACTGTTGGTGGATTTCACACACTGAACAGATATGTCATGGTTTTTAAGTCA
ATTAACGATTAATTTCTGGTGTTTAATCTGACTTGTTAGGATTGCAAGGAAACCAATGACAATT
CTTGTGATAAACAACCGTGGAGGTGGAATCTTCCGACTTCTTCCTATTGCAAAGAAAACAGAGC
CTAGCGTGTTAAATCAATATTTCTATACAGCACATGACATTTCCATTGAAAACTTGTGTTTGGC
ACATGGGTAAAAAACATATTCACATTTTTTACTTTGTTTTCCTTTCCCACTTTGCTATTATTTA
ATGTTTTACATGTTAAGTTTGTTTTATATACGCATGACCATAGCACAGATATTGATAGAAAATA
CAAGAAAAAGTAATCCAGTTTTGGTAGCTTAGTCTATAGTAGCGTCAGTTCTCCATGATTTACG
ATGTCTTTGATTATCTAGGGTCGTCATGGTTTACAGTAAGAAATAACTCAGCCAAATTGCTATA
TATGCAGTGTGAGGTATGTTCACGTTGGGACGAAAAGTGAACTTGAGGATGCTCTATTTGTACC
AAGCGTGGAGGAGATGGATTGCATTGTGGAGGTTGAAAGCTCTATAAACGCTAACGCGATTGTT
CATAGGTTATTTTGGGCTTTTGTTTTATTTTTGGGTTTTACATGTCCTCACTTCTGGAGCACTT
TGTTGACATTGAATACTCGCCCACAGCACTTTGGAGAGGTTTGCACGCCAAGCCGCAGAAAATT
CCCTGGGCATTGTTTCTGCCAGTTCTTTTCTTCATCCGATGATCAAAAATGTACTTCTTTGCCA
AGTCTCTGGAATACAATATTCGCAGTACAGGTAAGAATCCGTCAGAGACTATATCTGAATATTA
CCGTTTTCTTTTCTTTTTGTCTAATAAAGACTCTATTTGCAGAGTCAAACTGTGTGACAGACCT
ACCATATGTTCTGATGAATTCTCTCAATTCCATCGAGAAGGGTTCATACTCTCCCTGACTTTGG
AGGATGGAAGCATTGGCTATGGAGAGGTTGAATAATTTATTCTTTTTAATTTTTCATCAGTAAA
TAGTACATTCTCTTACATTTGTGTTACTTCTCCCAGGTCCCACTGAGAATCATGTTTAGCTTGT
ATTAGACTTACATGTGCCACTGAGTATCATGCTCTCGTGTTGTGTTTCATGAGCAGGTTGCACC
TCTGAACAGTAATGTAGAGAACTTAATGGATGTTGAGGGGCAGCTTCAGTTAGTTCTTCACCTC
ATGAATGAAGCTAAATTTAGTTACATGCTTCCTTTGTTAAATGGCTCGATTTCTTCCTGGATTT
GGAGTGAACTTGGAATTACTGTAAGCTTACCTAGCCTTAGTTCTGTCTGAAGAAAATTAGTTTA
TCCACACAGCTGATGTCAGATGTAAGCTTACCTAGGCTTATCAATTTCCTTCTTTTGTCTCAGG
CATCATCGATTTTCCCTAGTGTCAGATGTGGTCTGGAAATGGCTCTTCTAAACGCAATGGCAGT
AAGACATGATTCTAGTTTGTTGGGGATACTTCATTATCAGAAAGAAGAAAATGGTTCTGCTCAG
CCACACTCTGTTCAAATATGTGCCCTTCTTGATTCTGAAGGTACTCCACTGGAGGTCGCATACG
TTGCTAGAAAACTTGTTCAAGAAGGGTTCAGTGCTATTAAACTTAAAGTAAGCCAACGTTCCTT
AATCATACAAACAAGATGCTCGATCATCAAGTAAGATAGGCGGATAATTATTTTATTTTATGAT
TGAATGGTGGCTTTCTCAACGTTCAGTGCTATTAAACTTATGGTTGAGTTTTAGCATTTCATGC
ATAAATTGAAGTGGTTGGCTTTCTCACTTTGCGAATTTCAAGCTATTGATTGCTGACTGGTGGA
TAAACCTGCCTAAAATGACAGGTTGGTCGTCGAGTGAGCTCTGTTCAAGATGCTTTAGTTATGC
AAGAAGTAAGGAGAGCCGTTGGCGTTCAAATTGAACTCCGTGCAGATGCAAATTGTCGTTGGAC
TTTTGAAGAGGCTAGAGAGTTTGGTTTATTGGTGAACAGCTGTAATTTAAAATATATTGAGGTC
TGCTTCTGTATGAATTATTGCTATCTGATTGTGTTATGAAGTATTACTCCAAAATAACTGATTT
CTCTTGCCTATATAACTTCAGTGACAAACGTTTTGTATATCTCAGGAACCTGTCCAGAATAAAG
ATGACCTTATAAGGTTTCATGAAGAAACTGGATTACCAGTGGCACTTGATGAGACTCTTGATGA
TTTTGAGGAATGTCCTCTGCGTATGCTTACCAAATATACGCACCCTGGAATAGTTGCTGTT
Conservation Information
Conserved circRNAs NA
PMCS 0.118434066
Functional Information
Coding potential Y
Potential coding position 25901735-25904596(+)
Potential amino acid sequence MSFQISAESSLTEPYVAHMLSKALTSKSALFIGNSMPIRDVDMYGCSSENSSHVVDMMLSAELP
CQWIQVTGNRGASGIDGLLSSATGFAVGCKKRVVCVVGDISFLHDTNGLAILKQRIARKPMTIL
VINNRGGGIFRLLPIAKKTEPSVLNQYFYTAHDISIENLCLAHGVRYVHVGTKSELEDALFVPS
VEEMDCIVEVESSINANAIVHSTLERFARQAAENSLGIVSASSFLHPMIKNVLLCQVSGIQYSQ
YRVKLCDRPTICSDEFSQFHREGFILSLTLEDGSIGYGEVAPLNSNVENLMDVEGQLQLVLHLM
NEAKFSYMLPLLNGSISSWIWSELGITASSIFPSVRCGLEMALLNAMAVRHDSSLLGILHYQKE
ENGSAQPHSVQICALLDSEGTPLEVAYVARKLVQEGFSAIKLKVGRRVSSVQDALVMQEVRRAV
GVQIELRADANCRWTFEEAREFGLLVNSCNLKYIEEPVQNKDDLIRFHEETGLPVALDETLDDF
EECPLRMLTKYTHPGIVAVIAREMSFQISAESSLTEPYVAHMLSKALTSKSALFIGNSMPIRDV
DMYGCSSENSSHVVDMMLSAELPCQWIQVTGNRGASGIDGLLSSATGFAVGCKKRVVCVVGDIS
FLHDTNGLAILKQRIARKPMTILVINNRGGGIFRLLPIAKKTEPSVLNQYFYTAHDISIENLCL
AHGVRYVHVGTKSELEDALFVPSVEEMDCIVEVESSINANAIVHSTLERFARQAAENSLGIVSA
SSFLHPMIKNVLLCQVSGIQYSQYRVKLCDRPTICSDEFSQFHREGFILSLTLEDGSIGYGEVA
PLNSNVENLMDVEGQLQLVLHLMNEAKFSYMLPLLNGSISSWIWSELGITASSIFPSVRCGLEM
ALLNAMAVRHDSSLLGILHYQKEENGSAQPHSVQICALLDSEGTPLEVAYVARKLVQEGFSAIK
LKVGRRVSSVQDALVMQEVRRAVGVQIELRADANCRWTFEEAREFGLLVNSCNLKYIEEPVQNK
DDLIRFHEETGLPVALDETLDDFEECPLRMLTKYTHPGIVAVIAREMSFQISAESSLTEPYVAH
MLSKALTSKSALFIGNSMPIRDVDMYGCSSENSSHVVDMMLSAELPCQWIQVTGNRGASGIDGL
LSSATGFAVGCKKRVVCVVGDISFLHDTNGLAILKQRIARKPMTILVINNRGGGIFRLLPIAKK
TEPSVLNQYFYTAHDISIENLCLAHGVRYVHVGTKSELEDALFVPSVEEMDCIVEVESSINANA
IVHSTLERFARQAAENSLGIVSASSFLHPMIKNVLLCQVSGIQYSQYRVKLCDRPTICSDEFSQ
FHREGFILSLTLEDGSIGYGEVAPLNSNVENLMDVEGQLQLVLHLMNEAKFSYMLPLLNGSISS
WIWSELGITASSIFPSVRCGLEMALLNAMAVRHDSSLLGILHYQKEENGSAQPHSVQICALLDS
EGTPLEVAYVARKLVQEGFSAIKLKVGRRVSSVQDALVMQEVRRAVGVQIELRADANCRWTFEE
AREFGLLVNSCNLKYIEEPVQNKDDLIRFHEETGLPVALDETLDDFEECPLRMLTKYTHPGIVA
VIAREMSFQISAESSLTEPYVAHMLSKALTSKSALFIGNSMPIRDVDMYGCSSENSSHVVDMML
SAELPCQWIQVTGNRGASGIDGLLSSATGFAVGCKKRVVCVVGDISFLHDTNGLAILKQRIARK
PMTILVINNRGGGIFRLLPIAKKTEPSVLNQYFYTAHDISIENLCLAHGVRYVHVGTKSELEDA
LFVPSVEEMDCIVEVESSINANAIVHSTLERFARQAAENSLGIVSASSFLHPMIKNVLLCQVSG
IQYSQYRVKLCDRPTICSDEFSQFHREGFILSLTLEDGSIGYGEVAPLNSNVENLMDVEGQLQL
VLHLMNEAKFSYMLPLLNGSISSWIWSELGITASSIFPSVRCGLEMALLNAMAVRHDSSLLGIL
HYQKEENGSAQPHSVQICALLDSEGTPLEVAYVARKLVQEGFSAIKLKVGRRVSSVQDALVMQE
VRRAVGVQIELRADANCRWTFEEAREFGLLVNSCNLKYIEEPVQNKDDLIRFHEETGLPVALDE
TLDDFEECPLRMLTKYTHPGIVAV(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017