Detail information of AT1G55520_circ_g.12


General Information
CircRNA Name AT1G55520_circ_g.12
ID in PlantcircBase ath_circ_007546
Alias NA
Organism Arabidpsis thaliana
Position chr1: 20727372-20727562  JBrowse»
Reference genome TAIR10.38
Type   ie-circRNA
Identification method circRNA_finder, find_circ
Parent gene AT1G55520
Parent gene annotation TATA-box-binding protein 2
Parent gene strand -
Alternative splicing AT1G55520_circ_g.1 AT1G55520_circ_g.2 AT1G55520_circ_g.3 AT1G55520_circ_g.4 AT1G55520_circ_g.5 AT1G55520_circ_g.6 AT1G55520_circ_g.7 AT1G55520_circ_g.8 AT1G55520_circ_g.9 AT1G55520_circ_g.10 AT1G55520_circ_g.11 AT1G55520_circ_g.13
Support reads 2
Tissues whole_plant
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT1G55520.4:1
AT1G55520.1:1
AT1G55520.3:1
AT1G55520.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCTTGATCAGCCATTCTCTAACATAAGAATCAACGTAAACACACACACATCAGCTATAAATC
TCGTCTTAAATAGGGCAAAACAGAAACTCATaatcttaaaacagagacacaaaagagagaactc
actgaagagtaggaacaatccctgaaggatgtttagtaaggtcaactggctggctcccttccg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATCTTAAAACAGAGACACAAAAGAGAGAACTCACTGAAGAGTAGGAACAATCCCTGAAGGATG
TTTAGTAAGGTCAACTGGCTGGCTCCCTTCCGTTCCTTGATCAGCCATTCTCTAACATAAGAAT
CAACGTAAACACACACACATCAGCTATAAATCTCGTCTTAAATAGGGCAAAACAGAAACTCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.300412884
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017