Detail information of EPlOSAG00000022110_circ_ig.1


General Information
CircRNA Name EPlOSAG00000022110_circ_ig.1
ID in PlantcircBase osa_circ_042166
Alias NA
Organism Oryza sativa
Position chr5: 26730247-26730424  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRI-long
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGAAGACATGCCAAGGCATTCTTTGAGTTGCCAATCACTTTTGCATGAACCCATGCAGGATCC
AGTGGCCTTGAGGAAGAAACTGGAGccagctgctgatgtaaaacttttcttgtaaccttttctt
ccaatcttaattacattgaatgacctccttcggacattccggttaaaaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 178
Transcript exons: 26730247-26730424
CCAGCTGCTGATGTAAAACTTTTCTTGTAACCTTTTCTTCCAATCTTAATTACATTGAATGACC
TCCTTCGGACATTCCGGTTAAAAAAATGAAGACATGCCAAGGCATTCTTTGAGTTGCCAATCAC
TTTTGCATGAACCCATGCAGGATCCAGTGGCCTTGAGGAAGAAACTGGAG

Genomic sequence CCAGCTGCTGATGTAAAACTTTTCTTGTAACCTTTTCTTCCAATCTTAATTACATTGAATGACC
TCCTTCGGACATTCCGGTTAAAAAAATGAAGACATGCCAAGGCATTCTTTGAGTTGCCAATCAC
TTTTGCATGAACCCATGCAGGATCCAGTGGCCTTGAGGAAGAAACTGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.134962453
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study