Detail information of AT2G03060_circ_g.1


General Information
CircRNA Name AT2G03060_circ_g.1
ID in PlantcircBase ath_circ_012630
Alias 2:902749-903013
Organism Arabidpsis thaliana
Position chr2: 902749-903013  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G03060
Parent gene annotation Agamous-like MADS-box protein AGL30
Parent gene strand +
Alternative splicing NA
Support reads 1/1
Tissues leaf;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03060.6:2
AT2G03060.3:2
AT2G03060.4:2
AT2G03060.7:2
AT2G03060.2:2
AT2G03060.5:2
AT2G03060.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCAGATTCCTTTAGAACAACAGCTTCAATCTATGTCATGGATTCTTAATAGCAACACCACCAA
CATTGTCACCGAGGAACACAATTCAATCCCGCAGAGgaacattttgggcagcagcaacaggcaa
tgcaaatagaaaacgcaaactttgttaaggattggtcaacatgctcggtaatttactcgaatga
ctcttctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAACATTTTGGGCAGCAGCAACAGGCAATGCAAATAGAAAACGCAAACTTTGTTAAGGATTGGT
CAACATGCTCGGTAATTTACTCGAATGACTCTTCTTTAGTTCTCATTTGTAACAAAACAAATTG
TAAACCCGGCTGTACAACTTTCAGATGCAAGATGGGATTCAGATTCCTTTAGAACAACAGCTTC
AATCTATGTCATGGATTCTTAATAGCAACACCACCAACATTGTCACCGAGGAACACAATTCAAT
CCCGCAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.201573301
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020