Detail information of BGIOSGA001747_circ_ig.1


General Information
CircRNA Name BGIOSGA001747_circ_ig.1
ID in PlantcircBase osi_circ_009317
Alias Chr01:13024450_13026094(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 13998190-13999834  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGACACGATGAGGCATGAATGTTGTTGCATTTTATGCAGTATTGCTATGTTAGTTTCATAATTT
TCAGTATGTGTAAAGCTGTTCATAACATCTCTAAAGggttagtatcgcgttttttttaatttta
ttttgactatctcaccgtagatgctcggggaaacgcggcgccatcgtttgttcggctggctatt
tgatctag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTAGTATCGCGTTTTTTTTAATTTTATTTTGACTATCTCACCGTAGATGCTCGGGGAAACGC
GGCGCCATCGTTTGTTCGGCTGGCTATTTGATCTAGTCGGTTAGGTTTACGCTTTGTTGGGATT
ATGCGTGGTCCACTGTTTGTTCATGTAATTGTTTGTGTTTATGTTTTTATTATGTAATTTGCAG
CTTAAACATGTAAAACCAAATAACCCTTCTCCTGTAGGAACATGGAGAGGAACTGCCAATTTGC
CATGCTATTGTGAATTCTTGGTTTAGGTTTCGTTCTCGTTGCATCGATTTTTCATTATTCTGCA
GGGTTCCTCTATAACTGTTGACTTAGTTTCTCTTTAGGTCCGGAAAGGTAGTTGTGTGAATATG
GATTGTCAAATTTATCAGGCATTGGGTTTAGTTCATCATTTTAGTATTTGTTACTCTCTAGAAC
GACCTCAATTTTTCCTTCGCCTCTGCAATTAGGACATGCATGATTGTCAGTTATTGAGCCAAGC
TTGGGCTTGGTATTTGAAGGTCAGCATTTCCTGTGCCCTGTTTAGGGTTTCAACATATGTGGTA
ATTGCACCTTGCATGCTAACGAGAGACCAACAAATAGGCAAAGGATGCAGGGACAAACCCATCT
GTCAACCCTTTATCAAGTTTGAGATGCCCTGTGCCATTTATGATATTAGTATTGTTTGGTAAAT
TCGGTGATGAAACTTTGTCATGGTAGATTCATACAACATAATAAGACGATCGCTAGTTTCTCTT
CTGACATGCAGAGAGTGTCTCAATTAAAGGCCAGCATTGATGTACTTAGCTGCTCTGTATCAAA
CAGTAGTTCTAAATCCACTTCCTCATTTATATTTTTGATAGGGATATGCAGATATTGATTGGCT
ATTAGATTACTGTTCTTGCATTGTTGAGTTTCCCCTTCTGTTCTTGATTTGCTACGCTGTTGTT
CTTTGCTTAGAATCATCAGTTGACTTTGCACCATGCTTTGACCACCTCTACATTGTTCGCCTCT
CAAATGTTCCATGTGATGAATTCACATGCATCACTAGTTAGTTGTAGTATATAAGTTATGAAAT
CATTGAATTTTCTTTGAAGGGCTGGGCTTTGTGACATGATGCTACTTGCCCTTTCGCTTCATGG
TTTTGGTTAGTGCAATGTTGATGTTATCTGTATACCTTAGGATAGTTGAAGCCAAAATGAGCTG
AAATTATGATTATAAAATCTTGATGTTAAGTATTCTATGTGCAAAGATCTTTCACTGGACTTGA
CTTTTCCAGGTTACCAAACTTAGTACAATCTCTCATTGATGTGTATTGTCATCTTATTGTTAAG
TCTGATCACAACTATATTTTCTGTGTATACACCTATTTTGAGAAGGCAAAAACATTTGTATTGT
CAAGTTAATTTTTATCATAGTAACAGTAATTGGAATTTTTATATTCCTTTTCTATGTTTGTCTG
CTTGTTGATTAACTTGCTGCAATATATGCTTCTTCACTGGTTTATTTTTGTAACTGTAAAATAA
CAATTAGTTAGACACGATGAGGCATGAATGTTGTTGCATTTTATGCAGTATTGCTATGTTAGTT
TCATAATTTTCAGTATGTGTAAAGCTGTTCATAACATCTCTAAAG
Conservation Information
Conserved circRNAs osa_circ_001598
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021