Plant Circular RNA Database

Detail information of AT4G32880_circ_g.5

			
						 General Information
					
						CircRNA Name
						AT4G32880_circ_g.5
					
						ID in PlantcircBase
						ath_circ_034219
					
						Alias
						4:15866164-15867859
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr4: 15866164-15867859  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT4G32880						
					
						Parent gene annotation
						
							Homeobox-leucine zipper protein ATHB-8
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT4G32880_circ_g.4 AT4G32880_circ_g.6 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT4G32880.1:8

General Information
CircRNA Name	AT4G32880_circ_g.5
ID in PlantcircBase	ath_circ_034219
Alias	4:15866164-15867859
Organism	Arabidpsis thaliana
Position	chr4: 15866164-15867859 JBrowse»
Reference genome	TAIR10.38
Type	ue-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT4G32880
Parent gene annotation	Homeobox-leucine zipper protein ATHB-8
Parent gene strand	-
Alternative splicing	AT4G32880_circ_g.4 AT4G32880_circ_g.6
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT4G32880.1:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGGAGTGTACCTCACGTACTTCCCGTTGTCCATATTGTGACTATTATTGCTTCCTCCTCCCATC
TTTGATCCTCTCCGATCTCTCTATTTAATTTTGTTCctcaagatcgaaatgatcgacaatgtga
agaatggatccacctccttcgcaaggtctaatgaggtaaccacttggtaaaatctctgccctaa
cgaaatga

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTCAAGATCGAAATGATCGACAATGTGAAGAATGGATCCACCTCCTTCGCAAGGTCTAATGAGG
TAACCACTTGGTAAAATCTCTGCCCTAACGAAATGAGGAGACGGAGGCATACTTGGCCCGTTTT
GTGTATTGTTCAGTGATCGTTCGCATATCTGCAATAACATCTTAAATTAGTATCATCGAATGAT
CAAAAGAGAAACAAAGCATCGATGTTAAGAGGATAATTACCACAAGGCTCCCGTCTTCCATTAC
AGATGTGTAACGTAGCATCCAGAAGTCACGAGCTGGTGCCAGTGTTGTCGGCGCATAAAGCTTT
CATGAGAAAGAAAGAGAGGAAAATTTAGTTTTGTGTGATTCGATTATTTGGTTTGTGCTGAAGA
TAAAATCATCTTTAGGGTTCTTGATCATCAATACCTGCATGTAGATTAGTTCAAGGGTTCCACC
ATTTGCAGTGGATAGTACGTTAACTATATCCAGAGATCTGCAATCACGCAACCAACAAGGCTTA
TCCTTTAGGATCTCCGCGACCTGCGAAAAAAACAAAACAGAAATGTGATTTATGTTCTTGGTTG
ATCTATGAGGATGTACCTATTAGAAAGAAGTGAGAATAGTACTTACCCTTGTGGGATCAAGACC
CACAAGGCCGCAAGCACGAGCAGCGATTCCCGTGCATCCATGAGAAATAGCAACGATTCCTATG
GAATCCGGACCAGGCTGCAGATGAAATTAGTCAGTAAGGAAGTGAAAATGATTGAATCATAGAT
AAAAGAAGACGAGATAGACTTATGAGAATTACCTTCATCCCAGGCATTTGGACCCACTCGACAG
CGGTTCCAGTCGCCTTGGAAATGAACTCTGTTAAAGTTTCATCCGCAATGGACAATAATCTGGA
GATACACTCAAAGAGATTCATTGATTTAACAAAGATATATAGAAGCTTTAAATGGTGGCAGAGA
ACAAAAACTGACTCAAAAGTGTGTCATGTTATTTAAAGCCAAGAATTGTTGGTTCTAACTTACC
CAGCAGGACTAGCATCACGAGGCTGATGTTGAGGGGTCAAGTGGTGTTGACCACTCGTCACCAC
TGACTCACAGCTAGTATCTGTGGTAGCCAAATTCCCCTGCTGAGAGCGACAGACTATTTCAATT
CCTTAACTTATGTGTCAACTAATTAATGTGAATGAATCAAATAAATTAATCTATCTACGTTTTG
AGGATGTTGGCGAAAATAGCTGTTCTCATAAACCAAGTGAGACACTTGCTTTTGCAAGCGGTCA
TTCTCTTCCATCAAAAGCTTGTTCATTGCCGTTAGCTTCCTATTCACAGCTTGAAGTCGTGACG
CCTCTTTTCGCTGTTTTTCTCTACACCTGTATAAACTCACAGCGCCAAGAGTTATAAACCTAGA
AAGTTTCTTGGGTGTCAAGAAATGATGAGAATTAAGAAGAAATTGAACCTGCGGTTCTGGAACC
AGACTTTTATCTGTTTAGGCTCGATGTTGGAGAGGATAGGACATTCGCGGATTAGCTGTTGGCG
GCGCATAGAGCTCGGTTTAGGACAGTCATTGTAGAGTCTCTCCAGAGCTTCCACTTGTTCAGGA
GTGTACCTCACGTACTTCCCGTTGTCCATATTGTGACTATTATTGCTTCCTCCTCCCATCTTTG
ATCCTCTCCGATCTCTCTATTTAATTTTGTTC
						
					

			
		

Sequences
Splice junction sequence	AGGAGTGTACCTCACGTACTTCCCGTTGTCCATATTGTGACTATTATTGCTTCCTCCTCCCATC TTTGATCCTCTCCGATCTCTCTATTTAATTTTGTTCctcaagatcgaaatgatcgacaatgtga agaatggatccacctccttcgcaaggtctaatgaggtaaccacttggtaaaatctctgccctaa cgaaatga
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTCAAGATCGAAATGATCGACAATGTGAAGAATGGATCCACCTCCTTCGCAAGGTCTAATGAGG TAACCACTTGGTAAAATCTCTGCCCTAACGAAATGAGGAGACGGAGGCATACTTGGCCCGTTTT GTGTATTGTTCAGTGATCGTTCGCATATCTGCAATAACATCTTAAATTAGTATCATCGAATGAT CAAAAGAGAAACAAAGCATCGATGTTAAGAGGATAATTACCACAAGGCTCCCGTCTTCCATTAC AGATGTGTAACGTAGCATCCAGAAGTCACGAGCTGGTGCCAGTGTTGTCGGCGCATAAAGCTTT CATGAGAAAGAAAGAGAGGAAAATTTAGTTTTGTGTGATTCGATTATTTGGTTTGTGCTGAAGA TAAAATCATCTTTAGGGTTCTTGATCATCAATACCTGCATGTAGATTAGTTCAAGGGTTCCACC ATTTGCAGTGGATAGTACGTTAACTATATCCAGAGATCTGCAATCACGCAACCAACAAGGCTTA TCCTTTAGGATCTCCGCGACCTGCGAAAAAAACAAAACAGAAATGTGATTTATGTTCTTGGTTG ATCTATGAGGATGTACCTATTAGAAAGAAGTGAGAATAGTACTTACCCTTGTGGGATCAAGACC CACAAGGCCGCAAGCACGAGCAGCGATTCCCGTGCATCCATGAGAAATAGCAACGATTCCTATG GAATCCGGACCAGGCTGCAGATGAAATTAGTCAGTAAGGAAGTGAAAATGATTGAATCATAGAT AAAAGAAGACGAGATAGACTTATGAGAATTACCTTCATCCCAGGCATTTGGACCCACTCGACAG CGGTTCCAGTCGCCTTGGAAATGAACTCTGTTAAAGTTTCATCCGCAATGGACAATAATCTGGA GATACACTCAAAGAGATTCATTGATTTAACAAAGATATATAGAAGCTTTAAATGGTGGCAGAGA ACAAAAACTGACTCAAAAGTGTGTCATGTTATTTAAAGCCAAGAATTGTTGGTTCTAACTTACC CAGCAGGACTAGCATCACGAGGCTGATGTTGAGGGGTCAAGTGGTGTTGACCACTCGTCACCAC TGACTCACAGCTAGTATCTGTGGTAGCCAAATTCCCCTGCTGAGAGCGACAGACTATTTCAATT CCTTAACTTATGTGTCAACTAATTAATGTGAATGAATCAAATAAATTAATCTATCTACGTTTTG AGGATGTTGGCGAAAATAGCTGTTCTCATAAACCAAGTGAGACACTTGCTTTTGCAAGCGGTCA TTCTCTTCCATCAAAAGCTTGTTCATTGCCGTTAGCTTCCTATTCACAGCTTGAAGTCGTGACG CCTCTTTTCGCTGTTTTTCTCTACACCTGTATAAACTCACAGCGCCAAGAGTTATAAACCTAGA AAGTTTCTTGGGTGTCAAGAAATGATGAGAATTAAGAAGAAATTGAACCTGCGGTTCTGGAACC AGACTTTTATCTGTTTAGGCTCGATGTTGGAGAGGATAGGACATTCGCGGATTAGCTGTTGGCG GCGCATAGAGCTCGGTTTAGGACAGTCATTGTAGAGTCTCTCCAGAGCTTCCACTTGTTCAGGA GTGTACCTCACGTACTTCCCGTTGTCCATATTGTGACTATTATTGCTTCCTCCTCCCATCTTTG ATCCTCTCCGATCTCTCTATTTAATTTTGTTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.207448301

Conservation Information
Conserved circRNAs	NA
PMCS	0.207448301

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT4G32880_circ_g.5

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