Detail information of Os03g0225500_circ_g.1


General Information
CircRNA Name Os03g0225500_circ_g.1
ID in PlantcircBase osa_circ_018616
Alias NA
Organism Oryza sativa
Position chr3: 6574484-6574644  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method circseq_cup
Parent gene Os03g0225500
Parent gene annotation Nucleoporin, Common symbiosis signaling (SYM) pathway (Os03t0225
500-01);Nucleoporin, Nup133/Nup155-like, N-terminal domain conta
ining protein. (Os03t0225500-02)
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   AC-AC
Number of exons covered Os03t0225500-01:1
Os03t0225500-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAGGCTGCTGAACGGACGTTCTTTTTATTGACTAGTCATGAGCTGCAATGCTGGAGCATCTCA
TTCGGGCATGATATCAattaggagtttataatgctgatcattctcagaaaaatagtggtggaag
gtccttggcttggctaccaagtaaagcatcatc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 161
Transcript exons: 6574484-6574644
ATTAGGAGTTTATAATGCTGATCATTCTCAGAAAAATAGTGGTGGAAGGTCCTTGGCTTGGCTA
CCAAGTAAAGCATCATCTAAGGCTGCTGAACGGACGTTCTTTTTATTGACTAGTCATGAGCTGC
AATGCTGGAGCATCTCATTCGGGCATGATATCA

Genomic sequence ATTAGGAGTTTATAATGCTGATCATTCTCAGAAAAATAGTGGTGGAAGGTCCTTGGCTTGGCTA
CCAAGTAAAGCATCATCTAAGGCTGCTGAACGGACGTTCTTTTTATTGACTAGTCATGAGCTGC
AATGCTGGAGCATCTCATTCGGGCATGATATCA
Conservation Information
Conserved circRNAs osi_circ_014081
PMCS 0.232402847
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016