Detail information of BGIOSGA015740_circ_g.4


General Information
CircRNA Name BGIOSGA015740_circ_g.4
ID in PlantcircBase osi_circ_014354
Alias Chr04:209424_209837(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 189586-189999  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA015740
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015740_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA015740-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGCAGAGACGGATCATAGGGCGGGAGGCAGTGAAGTGCTTCCTCAACTCTGTCCACAGGGTCCC
TGTCATCCCCCAGAAGCAAAACTCCTTGCTCCGGCTccttgctgaaatctctttgtggaagctt
cagcttgtttccttagatcatctgcgttaaaataaaccaacataggcatgggaggcttcttgtt
gctccact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGCTGAAATCTCTTTGTGGAAGCTTCAGCTTGTTTCCTTAGATCATCTGCGTTAAAATAAA
CCAACATAGGCATGGGAGGCTTCTTGTTGCTCCACTCTTCCACACCGGCAATGATATGCTCCGC
AACCTATGCAGCAAGAAGAAAGTCAAGTGGCACACATGCAGGAGGGGAGGCAGAGAAGAAAATA
ATGATTTGTTCAATCCAATGGGGCTACTGACAACAGACGGGGTTGTGATCCCGGAGCGGTACGC
ATGCGCAAAATCACGGATCTTCCAGTAGAGGAAAGGGGGTTTGTCCCCGGCCGGCCAACGCAGA
GACGGATCATAGGGCGGGAGGCAGTGAAGTGCTTCCTCAACTCTGTCCACAGGGTCCCTGTCAT
CCCCCAGAAGCAAAACTCCTTGCTCCGGCT
Conservation Information
Conserved circRNAs osa_circ_022868
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021