Detail information of BGIOSGA031343_circ_igg.1


General Information
CircRNA Name BGIOSGA031343_circ_igg.1
ID in PlantcircBase osi_circ_008743
Alias Chr10:24792888_24796051(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21966164-21969327  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACATCCTGCGCATATGTCCGGCCGGCGATATCTTCAATAGGAGTAGCTAGCTAGCTAGCTAGTG
GTTCCTTCTCCGGCGATCCGGCCAGCGCCCTCCTGCcgttaatgcgaagaagagagatgcaatt
ccttggatgtgatccatttgcaatatgtgccacctcatgaagggagccgccgtttgacaaaatc
tcaagctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTTAATGCGAAGAAGAGAGATGCAATTCCTTGGATGTGATCCATTTGCAATATGTGCCACCTC
ATGAAGGGAGCCGCCGTTTGACAAAATCTCAAGCTGCAAAAGGCAAATTAACAAACATGACCAC
AACGAATTATAAGGTGAACAACAACAATTTTCAGTATGGACTGAGTATATTATATGGCTCTTCA
TTGTACCTGGCAGCGCTGTTGTTCATCTGCAAGAAGCTCAAACACCTGCTGATGGGTAAAAGGA
AGCCAGCTTGTGGAGACAGCGGTGAGGATGACACCGCTGGGCTGTCCGGGCTCAGTGTTCTTCC
GAGTTGTAACCCTGATAGTGTCCTGGGTTGAATCCGAGAGGGCCGTCCAAGATTGGGTTCCAGA
AGCACTGATGTTAGCACAGAAAGTGGTGATCATTCGCTGCGACAGCTTCATCATATTTGTTCTT
GCCTCAGGGGTGCGGATCACTGTGAATCAGAAACAAAGGGATCGAGAAGATTATATCATAAATG
GTCAGGATGGATTTTGTGAATTGTGAGAATTCAGAATCCACAACTCTACACAAACTGTGGATTC
TGAATTCTCACAATTTACAAATAGCTAGTGGTAATGCGCACCTCCGAGGTCGGCGATGTTACGG
GCGAGCTCACTGGCGAGGCGCTCGCACTGGCGCTGGAGGATGGAGAGCCAGCGCGTGGCCCCGA
AGGCGGCGCCGCTGGCGACGTAGTCCCTGAACACCGGCTGCAGCGGCTTCTCCTCCCCGACCAT
CTCCATGTGCTCCACCCACACCACCTGCATTGCCATTGTCACCTCCATTCATGTTCATGCTCAA
ATTAACACCCAATGCAAGCGTATGTACGTACCCTGGAGTATCCATTGGGCATGTCCTGGATGAT
GCAGCCGGACGGCCGCCGCCGGCACCTGACCACCGAGGCTTGGAGGAGCCCCTCCTCAAACCCT
TCCGCCGGGAAATCCACAATCGCCCAGCTCCCCTCGTCGGCGTTGTGCACGCAGTAACGGAAGA
ACACCACCTCGCGCGCCGCCACCAGAGGCGACAAGAACTGCACCTCTGCTTGCATCTGCATGCC
ATGTACCACGCGCATTTCAGTCCCCATCCATCCCAAAAACAACTAAGCTAATCAATCAGTAGTA
GGGGAGTAGTAATCAGTTAGTAATTACCAAGAGGAGAGTTCCACTGCCGAGGTGACCAGACGCA
GCTCCGTGGTTTATGATCTGGATTGTTCTTGCCTTGCAAACAATCGACGGGAACAGCTCCATCC
ATTTGTTCTGCAAAACAATATTAATCGACATTAATCAGATGATTAGAAATGAAGCATCATATAC
TAGTGGAAAATGGCAGTATCACTGCACTGCACTGACCGCATCGAGGAAGGCGTCCACCAAGTTG
ATGCTGTTCATGATGACCACCGCGTTGTCACGCGTCCCCTCCGCCCTCGCCACCGCGCCGCCGT
CTCCCTGCTTCGCGCCGTCCACCGGCCAGCTGAACATCCGCGCGTGCTCCTCCACGGCCATCAC
CTCCGCGCCACGCTGCCGCACCCACAGCGGCTCGCCGGCGCGGCACATCCTGGCGAGCTGGTCC
GCCGCCGTGGCGGCGAGGTCGACCACCAGCTGCTTGTCCTGCTCCTGCACGGGCGCCATCATGG
CGCCCATGTACGCCGCCGCGCCATCGTGCTGCGGCACGACGGGTGGCGGTATGAGGTCGCCGCA
GCCCATGACCGGCGCCTGCTCGGCGAAGTGCCGCGAGTAGACGTTCATGTCGAGGTCGAGCGGT
GGCATGAGGACCGGCGGCGGCGCCGAGATGCAGCTCAGGGCCGACGTCGACAGCACCGGCTGCC
GTCCGCCGCCGCCGCCGTAGCGGGTGGCGATGCAGGCCAAGCGGTCAAGCTGCAGCCAGGAAGC
ATATATAGGAGGAGTATTATGTGTTGGGAATTGGGAATGAATGGTAGGTAGGGCTTTAGGGAGC
TAGCGACCTCGTCTTTGAGCCTGGCGTTCTCGATGCGGAGCTGCTGCTCCTCGTAGGACATGTC
GGCGAGGACGGCGGCGTGGCCGCAGTTGGGGCAGACGACGTTGCGGATGGCGGCCTGGAGGCGG
AAGTTGTCGCTCTTGAGGTTCTCGTTCTCCGCGCGCAGAATCACGTTGTCCGCCCTGTCCTGCT
GCGCCTGAACATATTCAACCCAGCCAATGCATCATGAAGATATTGCCATTTGCATTTGCAAATA
CAGTAGCGTATATATGGAATTATTAATTTGCATATATATAGTACCTTCATCTGGGTCCGGCGAT
TCTGGAACCAGAACTTGACCTGGCGAGGTTTGAGGCCCAGTTCCTGGCTCAGCTTCAGCCGCTG
CTTGTCGTCCGGATGCGGGCACTCCTTGAACAGCCTGCATGGATGGATGCATGCACGCCACTTG
TCAGTATCACAATATCAGCAAGGTTTAGCAAGGTTTAATGGAGACGAATCGATCGAAACGGCTG
GCAATGGCATTGAAGAGGAAGAAGAAGATGGAGATGAAAACCGTACGCCTCCATCTGCTGGATC
TGGTGCGCCGTGTGGCGGTGGTAGCGCTTCTTCTTGGCGTTGCCCCCCGCGGCGCCGCTGGGCT
GGGCGGCGTCGGGCGGCTGGTCATGGCCGCTGTGCTGCGGCTTGTGGTCGTCGTCGACGTCGGC
GAAGCTGAGGAGGCCGTCGAGGTGGGCGCTGCCGGAGCCGCCACTGAGCTCCATGTCCATCTCG
AGGTCCATCTCCTCGTCCTTGGCCACATGGAGGCCGCCCATCAACCCCTCCTCCTTCTGCACCG
CACGCACGTATATAGCTAGTGTCATGAGGCTATGCAAAGAAAGAAAGGAAAAGAGAAAAGAAGA
GATTAGCCTACAGGTATTAAGGTGGCGGCGGCGTTGGAGAAGTGGTGGAAGGGCATGGCGGCGG
AGGAGGACATGAAGCCGGCGAGAGCGGGGTTGGGGATGAGCGGCGAGGCGAAGAGCGCGTCGGC
GGAGGAGGAGGCCCCGGCCATGGCGGCCATGGACGACAGGACCTGGCAGTCCCCGAACATCCTG
CGCATATGTCCGGCCGGCGATATCTTCAATAGGAGTAGCTAGCTAGCTAGCTAGTGGTTCCTTC
TCCGGCGATCCGGCCAGCGCCCTCCTGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021