Detail information of orai.005G174900_circ_g.1


General Information
CircRNA Name orai.005G174900_circ_g.1
ID in PlantcircBase gra_circ_000504
Alias Chr05:50972726|50977123
Organism Gossypium raimondii
Position chrChr05: 50972726-50977123  JBrowse»
Reference genome Graimondii_221
Type   ue-circRNA
Identification method CIRI
Parent gene Gorai.005G174900
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues leaf
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Gorai.005G174900.4:3
Gorai.005G174900.3:4
Gorai.005G174900.2:5
Gorai.005G174900.5:2
Gorai.005G174900.1:6
Gorai.005G174900.6:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATAGGACTTACAATTTTCAGGTCCATGGCCTGCAAAACCTTTTGGATTTCCTAAAAGATCTTC
CTGCATAAAACTACAGCATAGTAGTTCATACATGTGatttctactctgtcatgtcagaaggtag
tgcaactgattctgatgcggataatgaaagtcaagatggtgcagatgttgaaacagatgaagat
gatggaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTTCTACTCTGTCATGTCAGAAGGTAGTGCAACTGATTCTGATGCGGATAATGAAAGTCAAGA
TGGTGCAGATGTTGAAACAGATGAAGATGATGGAATATATTTTGATACAAATGACTTTTTGTCT
TCAGAAGCTTTAAGAAGTGCTTCCTATCGGTGTAGAGAAAGTGGAAGTGGCTGTGTGTTTGACA
AAGATGCTTCATTTTCTGATTGTGCGTGGGGGCCTGAAAAGGAAATCAGGATCATTCAATATCC
TTATGTCAAAAGAAGGGATAACCTGCCAGAACCAAAGGAGAAAGAGAAGCCAGTTGGTTTGTGG
TCTATTATCAAGGATAATATCGGAAAGGATTTATCTGGTGTCTGTCTTCCTGTGTACTTTAATG
AACCACTCTCTTCACTGCAGAAATGCTTTGAGGATTTGGAGTATTCATACTTGGTTGATCGAGC
CTTGGAATGGGGAAAGCAGGTCAGGTCCTCAGCTCTGCTTTCTTTTGTGGCAAAGAAGTTTTAA
AGCATGATCTGCTAGTTTCTTTAATCCAGGTAGATTATATACTGACTTTATGTAGATTAGCATA
TTAGAAGGTGCCAATACACTTTAGGCTTTTAGTTTGAAGTTGTCTCCTTTATCATTAACAGTTG
CTTAGTGACCTTTACTAGTTATTGAGTATCATTGGCTCTTAAACTATTTTTTTCTCATCTAACA
GAATAAATAAATAGCATGAAAACAATGGAGGAAAAGAAAGAATGAAAGTAATAATTGAAGATGC
TTTTTCCTGATAGTTATCTCTTATGCAACGAGAAATCTGTATATGCACCACTGCTGGCTTCATA
ACTCATTTCTGCGGGTTGGATTTGTTGGGGAACCTGTACATAATTTCATTGCCTGATTTTCTCA
TCCTAGATTGCTGCTTTAAAATAGTTTCCCATCCTCTTTCAAGATTTTATTGCTTTTTATGGGG
GACATCCTTCCACTGTATATAGGGGGTTGTTTTATTTGATGGGCTATTTATGCATAGATATCTC
CTTCTACCACTCTTCTGCAATAAACATCATTCCCACCCTTTCTTTAAACCTTTTTCATGGGGTA
AGACTAGATTGACCAAACATTGGGAAAGTACAAGGAAATAAATGCAGTATAGTCTATGAGATCT
GTTCTACTGCTGGAATCTTAAATTACTATAAAATTATTATTTTACAAGACTAAAAATGTAAATG
GACCCAAGCTAATCAATTTACTTACTGAACTAGCTATCTTATTGTTTTCATGTATGATCAGGTA
GGAATAATATGCACTTTTTGAGACATGCCTGTGGTTTTCTTCTACATTGTGTGTTATTGTTTTC
TCCCAGGAAAAATAAATGCTGCTAGCATTAAAGTAAAAAGCAGTTCGGAGAAGAAATATCCTGA
AGAAAGATAAAATTTCCTACTCCAAAGAATTGTTAGCTTTAAAATCTCAAAAATTTGGGAAAAG
AAATATCATTAGAAAAAAGTAAAAGTAACCTGCGGCTGCCACCTTTTCTCTTGAACGTCTTTAT
GAACATCTTTCACTACCATTGTTTTCTGACATTTTCTACTACATATGGTCTGTTGCTTGATTAG
ATGGATATTGATGCCTTGCAGAAAGATGTTTTGTGGTAGGGGCATTATATGATGTCCCTTCCCT
AGCATTTTACAAATATATGGCCACTCAATGCCATATAGTGTCTTAAGAAACTTCCAGAAATTGT
CCATATTTGTGATGCAGTTCTTTCCAAGTTATTCCTTTCTTTCATACTCTAAAATTGTAGATGC
AGAATACTAATTTTGTTGCAGGTTTATTAGACATTAAATTAATAAGGAAAATGCTAGTATTTCA
GCTCTGTGATTGTTTCCAACTTGTCCAGGAATGTGGGTCCGTATTCTTTTTCTTTTTTTGGCTG
CTAAATGTCTAATTGTTGCCGTGGTGTTTAAGTTACTTTCTTAGGTTCCAGGTGTAAGGAATTC
ATAGGAGCTTTTAATGAGTTTGTTTATGTTATAATTGAGTGCCAGTGATTGTTGACATTCTGCA
GGAAAATGACTTGATGAGAATTCTAAATGTTGCGGCATTTGCTGTATCTGGTTATGCATCGACA
GAAGGTCGGCAGTGCAAACCTTTCAATCCACTTCTTGGAGAGACCTATGAGGCTGACTATCCAG
ATAAAGGACTTCGTTTCTTCTCTGAAAAGGTATGCTATGTTGGATTAAGTAGTTCTTGGCTAAA
TTAATCTGAAACTTTGATGGAAAGATAAACAAAATGCCTCTGTTGCTCATGGTTGAAATAGGCC
AGTTTGTATGAGGTAGTTATATGACATTCAATCTAACAATTGGTTTGATAAGCTGCTTGCTTCC
AGGTGAGTCACCACCCAATGATTGTCGCCTGTCACTGTGAGGGTAGAGGCTGGAAATTCTGGGC
AGATTCCAATCTCAAAGGAAAATTTTGGGGACGATCTATTCAACTCGATCCTGTTGGTATTCTA
ACTTTGCAGTTTGAGGATGGAGAGACTTTTCAGTGGAGCAAAGTTACCACGTCCATATACAACA
TTATCCTTGGTAAAATCTATTGTGATCACTATGGTACCATGCGCATAAAAGGCAGTGGCAATTA
CTCTTGCAAGCTCAAGTTCAAGGAGCAGTCTATCATAGACCGAAATCCCCATCAGGTCATATTT
TATTCTCCTTAATGGAATGGTAAACCAAGCTTCATCGAGTATATTCCATAAGTTACATAGTTTC
TGTAATGGTGGACAAGCTCATGATTTGTTTTCTGGTCCACTCTTTACCTCTTGGAAGCAGTTCT
AAACGCCAATTGATATTTAGATTCATTGTTATTTTACTTCCTTCTATCGTTAAAATATTATAAA
ATTTTGGGAATGAGAGGTTTCAGTTGGCCAGAAACATGCAAAATTTTCATAAAGTGATAGTGAA
CAATTTTGGGGTTCTGTTTTATGCCAAAGTTGTGCACGGTTGTTTGAAACCTTTTACGCATTGA
ATGATTATTAACAGTTCTGGTTGACCATAATTTGAAGAAAGAAAAAAATTGATGGTTTCTCTTC
AATAATTTCAGGTTCATGGATTTGTGCAAGACAATAGGACAGGGGAAAAGGTTGCCATGTTGGT
GGGGAAATGGGATGAAGCTATGTATTATGTGCTGGGAGATCCAACTATGAAGCCAAAAGGGTAT
GACCCAATGACGGAAGCTGTGTTGCTGTGGGAAAGAGACAAATCTGCTACTAAGACAAGATACA
ATCTTACCCCTTTTGCAATATCCTTAAATGAATTAACTCCTGATTTATTGGAAAAATTGCCTCC
AACGGACTCAAGACTGAGGCCAGACCAGAGACACTTGGAGAACGGAGAATATGAAATGGCAAAT
GCGGAGAAGCTGCGGTTGGAACAGTTACAGAGACAGGTATTTACTTTTACAGTGTTTTCTTTGT
TGAGTTCAACGGGTAATGGCCATAGGATCTGAGCCTTGCATGGGTACTTGAGAAATATCACCGG
CATGAATGTTTAGTACTTAGTTTGACAGAACGTGTGTTTTTTCTGTAAACAAAAGAGTTGGAAT
GGTCCTTTGATGACTTTTTTGTCCATTGTTGCCTGCAACCTAAGAAAAAAGAAGGGATTGTAGA
TGTTGGGATTGAATCCTAAATCAACTGAATGCCACCGCTTAAGGGTAGATGCATGAACCAATTA
ATCTAAACTTCGGTTTCATCCTCAAGGGACCATGGTGATGAGATTGAGGATCCAAACTAACTCC
ACTTGATTTATTTGATTTGACATGGATTTAGGCAAGGAAATTACAAGAAAGAGGATGGCAGCCA
AGATGGTTTAACAAGGATGAAGATGGTTGTTATCGATACATCGGAGGATACTGGGAAGCAAGAG
AGAAAAGGAAATGGGATGGAATCCCTGATATATTCGGCCAGTGTAGCGGTAGTAGTCATAATTC
ACCTTCATGTTTGATCGAAGAGTGAGTAAGCTATATTTTGTTTCTGCTTGCTCGGCTTATATTT
TGGTTATTATTTATATCTTTGTCCCGTCTCATTTCTTGTCTACGAAGATGATGATTATGACAAC
TCATGAGTCTAGATAGATGTAAGCCTAATGAGCTTTTACTTGGGGTGCAATTGCTTTGTCAAAT
TCAGCTCTATTAGATGCCCTTCCTCTGGGCAGTAGTAATCCATGAAAACATCAACAGAATTGCA
TATTTTCCCCTTTTATCTTATAATCTATAATATATGTATATGTGAAGAATTTCTTCTCGGTGCA
AATGAGCAATGATAGGACTTACAATTTTCAGGTCCATGGCCTGCAAAACCTTTTGGATTTCCTA
AAAGATCTTCCTGCATAAAACTACAGCATAGTAGTTCATACATGTG
Conservation Information
Conserved circRNAs NA
PMCS 0.14549873
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017b