Plant Circular RNA Database

Detail information of 4_circ_igg.12

			
						 General Information
					
						CircRNA Name
						4_circ_igg.12
					
						ID in PlantcircBase
						ath_circ_030284
					
						Alias
						4:6663195-6665710
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr4: 6663195-6665710  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							igg-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							4_circ_igg.2 4_circ_igg.3 AT4G10843_circ_g.1 AT4G10843_circ_g.2 AT4G10843_circ_g.3 4_circ_igg.4 4_circ_igg.5 4_circ_igg.6 4_circ_igg.7 4_circ_igg.8 AT4G10843_circ_g.9 AT4G10843_circ_g.10 4_circ_igg.11 4_circ_igg.13 4_circ_igg.14 4_circ_igg.15 4_circ_igg.16 4_circ_igg.17 4_circ_igg.18 4_circ_igg.19 4_circ_igg.20 4_circ_igg.21 4_circ_igg.22 4_circ_ig.23 4_circ_ig.24 4_circ_ig.25 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	4_circ_igg.12
ID in PlantcircBase	ath_circ_030284
Alias	4:6663195-6665710
Organism	Arabidpsis thaliana
Position	chr4: 6663195-6665710 JBrowse»
Reference genome	TAIR10.38
Type	igg-circRNA
Identification method	find_circ; CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	4_circ_igg.2 4_circ_igg.3 AT4G10843_circ_g.1 AT4G10843_circ_g.2 AT4G10843_circ_g.3 4_circ_igg.4 4_circ_igg.5 4_circ_igg.6 4_circ_igg.7 4_circ_igg.8 AT4G10843_circ_g.9 AT4G10843_circ_g.10 4_circ_igg.11 4_circ_igg.13 4_circ_igg.14 4_circ_igg.15 4_circ_igg.16 4_circ_igg.17 4_circ_igg.18 4_circ_igg.19 4_circ_igg.20 4_circ_igg.21 4_circ_igg.22 4_circ_ig.23 4_circ_ig.24 4_circ_ig.25
Support reads	2
Tissues	root
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GATCTCATCTGTACATTTGCAGATTTTAATTTCGTTTGCAATTTTTGCAACCAGTTTCTGAAGC
AAGAGCCTCATGAATTCCTGGGGACCATGAAACAAGgatgtcaatctattcactttctggacgg
aggagacactaattgaggacaaatctttatcattttgcacttgtaatggagaaagatggagaag
attgtttt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GATGTCAATCTATTCACTTTCTGGACGGAGGAGACACTAATTGAGGACAAATCTTTATCATTTT
GCACTTGTAATGGAGAAAGATGGAGAAGATTGTTTTCTTTCTACAAGGTATCATCTCGAGTCAC
TAGCTACCTTATTTACTTGTAAGTGCTTTAACATACTGCATGTCGTGTTAAAATTCAGTTGCTG
ATGATTCTTAAAGAAACGTCGGATATGGAGAATCTGTTACAAATGGTTCACCTTTCAGGTTTGT
TCATGGTTTGAGAGTCAATACAAACATTCCCCAGCAGAAATCGACATGTTTTAGTAAGATAAAC
ATGAATGTATCAAAGTATTGTAAATTTGATGCCCTTGTTCCTAATCAGATCACTTCGTTCATAT
ATTTCCGTCTTGAATTCAGTTAACAAATTTGTATTTTCAACTGGGAAGGAGCTTGAAAATATAG
AACAAGAGAAGGAATTAGACCAACATGTTGTAAATTTAAAATTCCCTGTGCTAATATATCAGCC
AACCACGAACTCACTTGTAAGTTTCTGTTTACTTATGTCATGCTAAAGTGTATTGGATAGGTCT
TTTTACATTATTTCAATTGTATCCCGTTTTGGATTTTTTAGCATACTTGGGTATTGATTTCAGT
GGTTCTTAACCTATATAGTAAGTTATAGTTTGTGTTGTGCTCTCATATTGGACTCATATAGTGT
CGCGTACATGTCATACACCGTTATGCTTATTTCAGATATATCGCAATGGAGCTCTGAAATGGTT
GTGCATCATCTTAATGGAGTTCTGAAATGGTTGTGCATCATCTTCTTGTTTGTTAAGTTGACTC
CTTCTCCCAATTATGTATTTTTGAACCTTTCTTTCTAATTAGTTGTTCAAGTTACCTTTCTCTC
TTCTGTTTCACTTAGAAGTGCTGTGTTTCAGGGGATTCTTTCAGGTTCCTAAAGTATAGTTTAA
GAAAGCTGGTTGTATCAGATAGCGAGCTTAACTTTGTGTGTTTGTGAGTTCTGTTTTACCAAAT
CCTATGCAAATTATGTTGATTCTGTCATTATTTTTCACATTCCCAGGCATCAGTCTCTGGTTAT
CGGAGTGTCTTGAGGACTTTTTCTTAATTACCAGCATTTGTTGCGTCTTATGAGATCAATCTTC
AGGTAAAACTCCATTAATTGTAGATGATAAATTATATAATTATGAAGTGTTTCAAAATTTTACT
CGTCTCTACATTTTTGGCAGCTGAAAGATACATGGAGCATCAAGTGAATTCCTCCAAAGAAACA
GATCATTGGGAAGAGCCGTTGTCTGAAGGATGAATTGGTAAGCAGACCCAAAGTTGTATACTTT
GTTGTTTACTTACTGGCTATCTCTATTTTTTGTTTGCCTTTTTGCTTAATGATTTAATTCCTAC
GAACATGTCTTGTTTCTTTAACTGGCTTCCTTGTTTTCTCTTTTTTCTTCATTGCTTGTTTGTT
TCTTCATTGGTTCCATGCGTGCTTGTTGAATTCCTTCCTAGGTTTCTTGTGTGCTTGTTGATTT
CTTTCCTATGTATCTTGTGTGCTTGTTGATTTCTTTCCTTGGTTCCATGTGTGCTTGTTGATTT
CTTTCCTTGGTTCCATGTGTGCTTGTTGATTTCCTTCCTTGGTTTCTTGTGTGCTTATTTGTTT
CCTTCCTTGGTTCCATGTGTGCTTGTTGATTTCTTTCCTTGGTTTCTTGTGTGCTTGTTTGTTT
CCTTCCTTGGTTCCATGTGTGCTTGTTTGTTTCCTTCCTTGGTTCCATGTGTGCTTGTTGATTT
CTTTCCTAGGTTTCTTGTGTGCTTGTTTGTTTATTTCCTTGGTTCCATGCGTGCTTGATTATTT
TTTTCCTAGGTTTCTTGTGTGCTTGTTTGTTTTTTTAATTTCTTCCATGGTTACTTGATTTGTT
GTTACTTCTTTGCTTTCTTCCTTTGTTCCATGCATGCTTGTGTGTTTCATTCTCTGTTTCCTTG
CGTGCCTGTTTAACTTCTTGCTTAGTTGTTTGGTTCTTGCTTGCTTCCTTGTTTTCTTCTTTCA
ATCCTTACTAGCCTCTTGCTTCCTTGCTTGTTTTCTCACTTGCTCCTTTATTACATGCTTACTT
AATTTCCTTATCTACTGAACTTGTTTGACCTTTTTATCATTTTCTTAATCTTCTTACTTACTCA
CTTACTCAAAACTATCTCTCTAGCTTGTTTCTCAGTTGAATTTTATTTAGATAGTTCTAGGTCT
CTGTTTAACAATAGTATAGATGGAAGACTATTGAGCGTTTATCAACGGTTTCACACGATTCCAG
TTATACAATAATGGAGGTCTATGATCATTCTTCTCTCTTTACGTCCTCATTGATCAGGTGATTG
TGGGGCTTTTATATGTATATGTCCATGGGTTATACTAATATACAAGGTGATCTCATCTGTACAT
TTGCAGATTTTAATTTCGTTTGCAATTTTTGCAACCAGTTTCTGAAGCAAGAGCCTCATGAATT
CCTGGGGACCATGAAACAAG
						
					

			
		

Sequences
Splice junction sequence	GATCTCATCTGTACATTTGCAGATTTTAATTTCGTTTGCAATTTTTGCAACCAGTTTCTGAAGC AAGAGCCTCATGAATTCCTGGGGACCATGAAACAAGgatgtcaatctattcactttctggacgg aggagacactaattgaggacaaatctttatcattttgcacttgtaatggagaaagatggagaag attgtttt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GATGTCAATCTATTCACTTTCTGGACGGAGGAGACACTAATTGAGGACAAATCTTTATCATTTT GCACTTGTAATGGAGAAAGATGGAGAAGATTGTTTTCTTTCTACAAGGTATCATCTCGAGTCAC TAGCTACCTTATTTACTTGTAAGTGCTTTAACATACTGCATGTCGTGTTAAAATTCAGTTGCTG ATGATTCTTAAAGAAACGTCGGATATGGAGAATCTGTTACAAATGGTTCACCTTTCAGGTTTGT TCATGGTTTGAGAGTCAATACAAACATTCCCCAGCAGAAATCGACATGTTTTAGTAAGATAAAC ATGAATGTATCAAAGTATTGTAAATTTGATGCCCTTGTTCCTAATCAGATCACTTCGTTCATAT ATTTCCGTCTTGAATTCAGTTAACAAATTTGTATTTTCAACTGGGAAGGAGCTTGAAAATATAG AACAAGAGAAGGAATTAGACCAACATGTTGTAAATTTAAAATTCCCTGTGCTAATATATCAGCC AACCACGAACTCACTTGTAAGTTTCTGTTTACTTATGTCATGCTAAAGTGTATTGGATAGGTCT TTTTACATTATTTCAATTGTATCCCGTTTTGGATTTTTTAGCATACTTGGGTATTGATTTCAGT GGTTCTTAACCTATATAGTAAGTTATAGTTTGTGTTGTGCTCTCATATTGGACTCATATAGTGT CGCGTACATGTCATACACCGTTATGCTTATTTCAGATATATCGCAATGGAGCTCTGAAATGGTT GTGCATCATCTTAATGGAGTTCTGAAATGGTTGTGCATCATCTTCTTGTTTGTTAAGTTGACTC CTTCTCCCAATTATGTATTTTTGAACCTTTCTTTCTAATTAGTTGTTCAAGTTACCTTTCTCTC TTCTGTTTCACTTAGAAGTGCTGTGTTTCAGGGGATTCTTTCAGGTTCCTAAAGTATAGTTTAA GAAAGCTGGTTGTATCAGATAGCGAGCTTAACTTTGTGTGTTTGTGAGTTCTGTTTTACCAAAT CCTATGCAAATTATGTTGATTCTGTCATTATTTTTCACATTCCCAGGCATCAGTCTCTGGTTAT CGGAGTGTCTTGAGGACTTTTTCTTAATTACCAGCATTTGTTGCGTCTTATGAGATCAATCTTC AGGTAAAACTCCATTAATTGTAGATGATAAATTATATAATTATGAAGTGTTTCAAAATTTTACT CGTCTCTACATTTTTGGCAGCTGAAAGATACATGGAGCATCAAGTGAATTCCTCCAAAGAAACA GATCATTGGGAAGAGCCGTTGTCTGAAGGATGAATTGGTAAGCAGACCCAAAGTTGTATACTTT GTTGTTTACTTACTGGCTATCTCTATTTTTTGTTTGCCTTTTTGCTTAATGATTTAATTCCTAC GAACATGTCTTGTTTCTTTAACTGGCTTCCTTGTTTTCTCTTTTTTCTTCATTGCTTGTTTGTT TCTTCATTGGTTCCATGCGTGCTTGTTGAATTCCTTCCTAGGTTTCTTGTGTGCTTGTTGATTT CTTTCCTATGTATCTTGTGTGCTTGTTGATTTCTTTCCTTGGTTCCATGTGTGCTTGTTGATTT CTTTCCTTGGTTCCATGTGTGCTTGTTGATTTCCTTCCTTGGTTTCTTGTGTGCTTATTTGTTT CCTTCCTTGGTTCCATGTGTGCTTGTTGATTTCTTTCCTTGGTTTCTTGTGTGCTTGTTTGTTT CCTTCCTTGGTTCCATGTGTGCTTGTTTGTTTCCTTCCTTGGTTCCATGTGTGCTTGTTGATTT CTTTCCTAGGTTTCTTGTGTGCTTGTTTGTTTATTTCCTTGGTTCCATGCGTGCTTGATTATTT TTTTCCTAGGTTTCTTGTGTGCTTGTTTGTTTTTTTAATTTCTTCCATGGTTACTTGATTTGTT GTTACTTCTTTGCTTTCTTCCTTTGTTCCATGCATGCTTGTGTGTTTCATTCTCTGTTTCCTTG CGTGCCTGTTTAACTTCTTGCTTAGTTGTTTGGTTCTTGCTTGCTTCCTTGTTTTCTTCTTTCA ATCCTTACTAGCCTCTTGCTTCCTTGCTTGTTTTCTCACTTGCTCCTTTATTACATGCTTACTT AATTTCCTTATCTACTGAACTTGTTTGACCTTTTTATCATTTTCTTAATCTTCTTACTTACTCA CTTACTCAAAACTATCTCTCTAGCTTGTTTCTCAGTTGAATTTTATTTAGATAGTTCTAGGTCT CTGTTTAACAATAGTATAGATGGAAGACTATTGAGCGTTTATCAACGGTTTCACACGATTCCAG TTATACAATAATGGAGGTCTATGATCATTCTTCTCTCTTTACGTCCTCATTGATCAGGTGATTG TGGGGCTTTTATATGTATATGTCCATGGGTTATACTAATATACAAGGTGATCTCATCTGTACAT TTGCAGATTTTAATTTCGTTTGCAATTTTTGCAACCAGTTTCTGAAGCAAGAGCCTCATGAATT CCTGGGGACCATGAAACAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.096494698

Conservation Information
Conserved circRNAs	NA
PMCS	0.096494698

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of 4_circ_igg.12

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