Detail information of Os04g0435300_circ_g.3


General Information
CircRNA Name Os04g0435300_circ_g.3
ID in PlantcircBase osa_circ_023894
Alias Os_ciR1369
Organism Oryza sativa
Position chr4: 21653643-21655709  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method find_circ
Parent gene Os04g0435300
Parent gene annotation Hypothetical gene. (Os04t0435300-01)
Parent gene strand +
Alternative splicing NA
Support reads 10
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0435300-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGATGAATAAACATGGTTGATGTCAATGAGCAGACGATTGGATCAGCTTGGACTGAACACGT
ACTATTTTCTGACTGCAAGTCCAAGGAGAGTAACAAtcttcagctatgcatcaagtaattagaa
tgcaagaagaacatggaaatgaaggaatcttgaatatcatcatttcgcctctgcaaagtttcag
agatatta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 584
Transcript exons: 21653643-21653747,21654588-21654686,21654782-21655052,21
655601-21655709
TCTTCAGCTATGCATCAAGTAATTAGAATGCAAGAAGAACATGGAAATGAAGGAATCTTGAATA
TCATCATTTCGCCTCTGCAAAGTTTCAGAGATATTAATGATTAAATTGGTGTTAGCTGAAAGTA
AGAGGAACGAGCACCTAAGAACTATAGGAATGGGAGGCATCAGGAAAATCATCAGACCAAATCT
CCAATACCAGAGCTACAAGAAACAGAAGCTTGAACATTTTCTTCAGAGTACTAGAGTATATATA
GACCTATGCAGTGCAGGGCTGTGAAGGATAAATGAATTGAATCTGGTAGATGGTGCACAATAGG
ACACTGAAGTGAATGATCACATATATTGGCCAAGAAACATGTACAAGTCACTGTACAACATCTG
CAGGGATGTGATCTTCTGGGTACATCAGAAAGCTGATTGACATAATGAAGAGTAAGCAGAGAAC
AGTGCAGACACTTGGGATCTTTTGAGAGGACTGGATTCTGATGAATAAACATGGTTGATGTCAA
TGAGCAGACGATTGGATCAGCTTGGACTGAACACGTACTATTTTCTGACTGCAAGTCCAAGGAG
AGTAACAA

Genomic sequence TCTTCAGCTATGCATCAAGTAATTAGAATGCAAGAAGAACATGGAAATGAAGGAATCTTGAATA
TCATCATTTCGCCTCTGCAAAGTTTCAGAGATATTAATGATGTAAGTATTTTATTTAATTTTTA
GTGAGGCATATATATAGGTGCTGCCATTCCCTTTCTGATTGAGAATTAAAAGGTGCATATAGAT
GCTAATATATGTTTTGTCCAATTCTTTGTTATGTTCATGTGATGGGGAGTATCTCAGTAGTGTC
GTTCAATCCATTCGGATCATTTTGCATATTATAGATGCTAAGTGCTTAGTGCTGATATATACTC
CATAAATGATATAGAGTTTATATAAAATAAACAGCATACACGCATGTCTCTATGCTGAGCTGCT
TAGTTACATCATGTGCATTTGTGCTCTCTTATCTATCTTGACTATGGGTTCATCACTGAAGAAC
TAGTGATGAGTATGTGCCATTTCTGGATCAAAGAGAAGTAGTGTCATTTAGATGTTATCAAGTA
TGAATACAGTTTCAAACTAGTAGGGAATGTGGAATTTTTAGACATGTTTAGGAGTGCAGGATTT
TTTTAATTGAACCATCTCTCTGAAACGTTAGATAATTAGAGCCCAATTTCTATGCACTACACTC
CATTTTCTCTTGTTCTTCATGATTCACTCTAAAATGTCCATTTTCCAGTGTCCCCCTTTTGTTT
TCTCTGCGGAAACAATTGAGCAAGTCAAAAGGAAGAGGAAGGAGTGATTAAGAATAATAGGAAT
GGGAGGCATTGGGAAACACTCAGCCAAATTTCCACCTCTATTGTCAGAGATGGAAACTAAAGGT
TTAGGTTTCCTCCATGTTCCCATTCCAACCATTCTTAGACCCTCTTTCTTCCTCTTCCCGACTC
ACTGCCAAGGCATCTAAATGTGGACATGGATACATTTTGTTTTCTCTAGTAAATTGGTGTTAGC
TGAAAGTAAGAGGAACGAGCACCTAAGAACTATAGGAATGGGAGGCATCAGGAAAATCATCAGA
CCAAATCTCCAATACCAGAGGTTAGAGCTTAATTTGGCTTTCCTTCATGTTCCCATTCCTACTG
CTCTTAGAGTCTCTCTTCCTCTTCCTGGCTCACCCTCTTTTTGGCACACAGCTACAAGAAACAG
AAGCTTGAACATTTTCTTCAGAGTACTAGAGTATATATAGACCTATGCAGTGCAGGGCTGTGAA
GGATAAATGAATTGAATCTGGTAGATGGTGCACAATAGGACACTGAAGTGAATGATCACATATA
TTGGCCAAGAAACATGTACAAGTCACTGTACAACATCTGCAGGGATGTGATCTTCTGGGTACAT
CAGAAAGCTGATTGACATAATGAAGAGTAAGCAGAGAACAGTGCAGACACTTGGGATCTTTTGA
GAGTAAGAATTCAGAGTGGAGAAAGAGTCAATGTGAATCTGAATTTAAAGTGGATCCTGTGTGA
GTGTGGAACATTGCACGTTTCTTTTCTGATACAGATACTTAGCAAAGTTACTTGTACTCAAGTA
TTAAGCCGTAGCAACACATATGCTGTAACATTAAATTCACTAATGCTATCTGACAAAATAATCA
CCAGGACTTGAATAGCTAAGCAGTTTTGTCAATCTCTCTTTTGGGTGCTTCACTGTCTTTGGAA
ACTTAAATGCTCAGGATATAACGGTGATGTGGCCATGTTATAGGTCATATTAACTTCCAAAACG
TTTTATCTGACAGTATTAACCTTCAATTTCTCATAGGTTTCATCTATCAAATTTTGCTAGATTT
CAGAATAGGCACCTTGTTCTACACTTATACATCTTTTCAGAATGCCCACCTAGTAAATAGTTTT
TGCAAGAACAAACGACATGTTTAGAACAAAACACCATCCATACATCAATACCATGTTCACTTTT
GCATGCACTGATTAATACATAATTTGTTTGGCTTTCAGGGACTGGATTCTGATGAATAAACATG
GTTGATGTCAATGAGCAGACGATTGGATCAGCTTGGACTGAACACGTACTATTTTCTGACTGCA
AGTCCAAGGAGAGTAACAA
Conservation Information
Conserved circRNAs osi_circ_005469* osi_circ_014385
PMCS 0.221020404
Functional Information
Coding potential Y
Potential coding position 21655625-21653661(+)
21655632-21653665(+)
Potential amino acid sequence MVDVNEQTIGSAWTEHVLFSDCKSKESNNLQLCIK*(+)
MSMSRRLDQLGLNTYYFLTASPRRVTIFSYASSN*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015