Detail information of Zm00001d031569_circ_g.2


General Information
CircRNA Name Zm00001d031569_circ_g.2
ID in PlantcircBase zma_circ_003539
Alias seedling_test_circ_000675
Organism Zea mays
Position chr1: 194688585-194690035  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method find_circ
Parent gene Zm00001d031569
Parent gene annotation Peptidyl-prolyl isomerase
Parent gene strand +
Alternative splicing Zm00001d031569_circ_g.3
Support reads NA
Tissues seedling
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d031569_T001:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGACTGTCACAGAAATTGGGGATGATAAGAAAATCCTTAAGAAGGTTCTCAAGGAGGGAGAAG
GTTATGAGCGTCCCAACGAGGGTGCTGTTGTTGAAGgtgcattacacgggcacgctccttgatg
ggacaaaattcgactcaagccgtgatcgtggagaacccttcaagttcaagcttggacaaggtaa
atttcttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTGATCGTGGAGAAC
CCTTCAAGTTCAAGCTTGGACAAGGTAAATTTCTTCCTCCCCCTGAGGTTATTTCTTCTGTCTC
GTTTGAATTTTAAATATGGATTTGGAAGTAGCATTAACCTTGTAATGGTAAAACAGTTCAAAGT
TATCAATCTTTCGTTAGTTAGATAAGTAGTTTTGATCACATCGTCTTGTTCCATTGATATCATG
GATACTGCCAGTGGACACTTACTGTATCTATGAAATTGATGTAAAGTTGTGAGTGCTTGGTAGT
GTCTTCACTTGCCTATAACGAAGTATTTCGTGGCTGTGTTTCTGTTTCTGTTTGTCGCAGAATA
ATGCCTACTCCGTGTAGATATAGATATGACCCCAAGCGATGCTTACATCGGTATAAGGGGCTAT
GATGTTTGAAAAACATGCTGATGATTGAGTAAATTCTAGCTTGGAGATCATCCTGTTTCTCTCT
TGCCTCTTTGTTGACATTGCCAAGTTGAAAAATAATGCTCATTAACTATTTTGTCAATGCCCAG
GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGAAAATGCTATTTT
TACCATTCCTCCAGAGCTGGCTTATGGAGCATCTGGTTCACCTCCAACTATCCCACCCAATGCA
ACCCTGCAGTTTGATGTTGAGCTGCTTTCATGGACCAGTGTCAAAGACATTTGCAAAGATGGCG
GCATATTCAAGAAGATCCTTAAAGAGGGAGAGAAATGGGAGAACCCAAAGGATCCTGATGAAGT
ACTTGGTAATTTTTTTGCTTATTGCGACACTTTTCATAGAGCTGATTTATTTGGTTCCTATAAC
TTATACTCTCCTTGCTCTTGTAGTGAAATATGAGGCCCGTCTGGAAGATGGTACTGTTGTATCC
AAGTCTGAGGGGGTTGAGTTTACTGTGAAAGATGGTAACCCTCTTATGTTCTGTCTTCACATGG
TCTTCTGAAGATTTTTGTGCCTATCGGTTGTTTTCTAACTACTGTATTGCCAGGCTACTTTTGT
CCTGCCCTGGCCAAAGCTGTCAAAACCATGAAAAAGGCAGAGAAGGTGCTCCTTACAGTAAAGC
CACAATGTGAGATTCCATTTCAAAGTTTGATTATTCTTCTGTAGTTACATGTCTATTTTCTCTG
AATTATGACACTTATTTGAACTTCCTCACTTCAAATGCAGATGGATTTGGTGAGAAGGGTAGAC
CAGCAGCTGGAGAGGAAGGTGCTGTGCCGCCAAATGCTTCGCTGCTCATTGACCTTGAGTTGAT
TTCATGGAAGACTGTCACAGAAATTGGGGATGATAAGAAAATCCTTAAGAAGGTTCTCAAGGAG
GGAGAAGGTTATGAGCGTCCCAACGAGGGTGCTGTTGTTGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.012577533
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018