Detail information of Csa1G651670_circ_g.3


General Information
CircRNA Name Csa1G651670_circ_g.3
ID in PlantcircBase csa_circ_000657
Alias Chr1:25812319_25815578
Organism Cucumis sativus
Position chrChr1: 25812319-25815578  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method CIRI2;Find_circ
Parent gene Csa1G651670
Parent gene annotation NA
Parent gene strand +
Alternative splicing Csa1G651660_circ_g.1 Csa1G651660_circ_g.2 Csa1G651660_circ_g.3 Csa1G651660_circ_g.4 Chr1_circ_ig.139 Csa1G651670_circ_g.1 Csa1G651670_circ_g.2 Csa1G651670_circ_g.4 Csa1G651670_circ_g.5 Csa1G651670_circ_g.6 Csa1G651670_circ_g.7 Csa1G651670_circ_g.8
Support reads NA
Tissues leaf,root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Csa1G651670.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGTTGCTTGTTAATGGAACGTATCGGAAAACAATTCGCACCTATCTCGATTCATCTATACTCC
AGTATCAATTGCAAAGATTGGATCATTCCCTTAAAGaaagatcatcaagccattgatatacttt
tagcagagattgacatatatgagctttttgctttcaaacattgcaagggaaggaaagtcaaact
tgctctct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 679
Transcript exons: 25812319-25812424,25812579-25812718,25812859-25813017,25
813092-25813195,25815409-25815578
AAAGATCATCAAGCCATTGATATACTTTTAGCAGAGATTGACATATATGAGCTTTTTGCTTTCA
AACATTGCAAGGGAAGGAAAGTCAAACTTGCTCTCTGTGAAGAACTTGATGAGAGGATGCGGGA
CTTGAAAAATGAGCTTCAGTCGTTTGATGGTGAAGAATATGATGAAGATCATAAGAGGAAGGCC
ATAGATGCACTAAAACGAATGGAGAATTGGAACTTATTTAGTGATACGTACGAGGAGTTCCAAA
ACTACACTGTAGCACGTGATACTTTTCTGGCTCATCTGGGTGCTACTCTCTGGGGGTCAATGAG
ACATATTATATCACCTTCACTGTCTGACGGGGCATTCCATTATTTTGAGAAAATATCATTTCAA
TTGTTTTTCATCACACAGGAGAAAGCTAGAAACATTAAACAATTGCCAGTAGATCTTAAAGCTA
TAAAGGATGGGCTCTCGTCTTTGTTGTTACCTTCACAGAAACCTCTATTTAGTCAGACCATGTT
ACCACTCTCAGAGGATCCTGCTTTGGCAATGGCTTTCTCAGTGGCACGACGTGCAGCAGCTGTT
CCACTGTTGCTTGTTAATGGAACGTATCGGAAAACAATTCGCACCTATCTCGATTCATCTATAC
TCCAGTATCAATTGCAAAGATTGGATCATTCCCTTAAAG

Genomic sequence AAAGATCATCAAGCCATTGATATACTTTTAGCAGAGATTGACATATATGAGCTTTTTGCTTTCA
AACATTGCAAGGGAAGGAAAGTCAAACTTGCTCTCTGTGAAGGTTACTAATTTCTTCCTTTAGA
ATGCAAGCTTGAATATTAATTTTATATTTAATTCAGTTGACATTGTTGCTTTGATAAATTGCGT
TTCAAAAGAATGCTTGGTATATGATTGTTTGATTTCTATGTGTACAATTTGGTGTTCTTTTCAC
ACAGAACTTGATGAGAGGATGCGGGACTTGAAAAATGAGCTTCAGTCGTTTGATGGTGAAGAAT
ATGATGAAGATCATAAGAGGAAGGCCATAGATGCACTAAAACGAATGGAGAATTGGAACTTATT
TAGTGATACGTACGAGGTAAAGGCCAGACTTTTATAGGTTTTGTTATTTTTCACTTTTGTGCAA
CACTTCATGCATTCTTTATTATGTTTTGTAGAAGTGTTGTAACACTCAACATGAATGTGTACTT
TTTTTCTCTAAATTTTTGTAACATGCAGGAGTTCCAAAACTACACTGTAGCACGTGATACTTTT
CTGGCTCATCTGGGTGCTACTCTCTGGGGGTCAATGAGACATATTATATCACCTTCACTGTCTG
ACGGGGCATTCCATTATTTTGAGAAAATATCATTTCAATTGTTTTTCATCACACAGGAGGTATG
GTCCATATTTCTAAATATACGGAAGGACCATTGGTATATATTAAAATTTTCCAAACTCTCTTGA
TGCAGAAAGCTAGAAACATTAAACAATTGCCAGTAGATCTTAAAGCTATAAAGGATGGGCTCTC
GTCTTTGTTGTTACCTTCACAGAAACCTCTATTTAGTCAGACCATGTATGTCGTTTATCATGTA
GTCATATACAATTTATATTATATTTATATCTTTGTACCGTCTGTTCATTATCTCCATGAAGATG
CTCGTTTCCTTTTTTTTTTCCGAAGAAATAAAGAAAGCGAAGAAATCTAGTGATAAAAACAAAG
TAAAGCAAACCAAAGCATCCAAAAGAAACTAAAGAAAGACAAAGAAGACCAAACACAAGGCTAG
AAACAGCCAAACTAAACAGCGCTAGACCCATAAATTAGAAGTGACGACAACCGAACTTTGAGGC
AGCAACAAAGAACCAAAAAACCAAAAGTAGCTAAAACTCAAACTCCATATCGGAAACAACCAGG
ATGCAAACAGAGAGCCGGTAGCCATGATAACCAAGATAAAACTCTTTATTAGGCACAATATACA
GGAATTTCACGTAATTGAAGGCCACAAACTGGCATAAGAGAACCAAGTTTGCTTTGAATTGATG
AAGGATGTAAAGAAGACTTGTCAGCGCAATCCTGAAAAAAAGAGCTTCCTAAGAAATATCATCC
AATATTTATTAATGGTGGGCAATATGGACTCCATACTACTCATGCTGACCTTAGAATCAGCATC
CAAAGTATCAAATCTAAAAGGATTCTTTCATTTTTTTCTCAATGAAAGTCATCATTCTCCTCAA
AAGAAAAAGCATCAAATCTAAAAAGAGAATTTGTAGAAGTTGAAGGATCTTTTGGTGAATGAAT
GACTCCTTTGGTGAATAAAGGATTAGGAAAATCCTTAGTGATGGCTTGTTGGCTGCAAAAAGTG
GGATTGGGGACCAAGAAGAAGATGATTATTTGATTAAGGAAACCACTAAACCTGTAAGCCTTTT
TTCAAGAATATCCGAGTCTGCATCAGGGAATATAGGTGACTTTCTCCATAGAACTCGGGGATAC
AGTTGTCCAACCTATATAATAGATCTTGTTCAAGTAAGGTCGTTATAGGTAATTTTCTCCAAGA
ATAGGACTTAAGAAATGCTTCAATATGGCTTCTCTTCTAACTAAGAGGTCATGGTTCAATACAT
GATGACCCCCTACTTAGAAATTAATTTCCTACGAGTTTCCTTGATACCCAAATGTTGTATGGTT
AGGCGAGTTGTTCCGTTGCACTCACTGATATTGAAAAAACATACCCTTCTTTTCAAGGGAATTT
AAATTGTGCCTCTTCACTGCAAAAAGAGCTTCCCTCTCATTGCCTATCTCCTCATATCTCCTAT
TTATGTTGTATGAATCAAGAAGACATTCAGCACTTTCTTTTCAAGTGTCCTTATGCAGTCAATT
GTTGGTATAGAGGCTGTTGCAAAATTTTAATTTCAGATAGGGTTTTTATGGCAGCTTTAGTGGG
TAATGTGCTGCAAATTCTCCCTGGACCAGATTTAAAGAGAACCCCATCAATTTATGGTGCAATG
CAGTCAAGGCCTTGTTAGTAGAAATATGGTTTGAAAGAAATCAACGCGTATTCCACAATACGAC
TTCAGTATGGTTCGATCGATTTAAGTATGCCCGTTTAAATGCTTCATCATGATGCCATGTGGTC
ACAGGATTTCAGGATTACTCCACACAGGACATTCACCTCAATTGGCAAGCTTTTATTGTTTAGT
CATTTTGAGTCCAGCTAAGGAGATTTAGGCAAGTGCCTTGTTTTTGCCCAGTTTAGAGTTGTCT
TTTAGTCTTTTGTTAATGATAGGCTGCTGATGTAAAGGTCTTATGTTTTCGACCATTTTTACTT
TTTCAATGTCATTTCATTTCTCTATTTTTTTTTATATGATGAGGAAGCTAAGGGGGGTGTCAAC
CTAGTTGAGATGTCTGGGTGTGTCTACTCATCTCTAGTTTTTTAATTTCTTATCGTATAATCTT
CTTGTAATTTGAGTTCTGCCACATTCTTTATAATAAATGGGATTTGTTTCCTTGTTTTTTTTAA
AAAATATCACCTGGAGAATTAATCCATTAAAATACCTGAAATTTCTGGTAAAGATCAAAATTTC
AGAATTCTTTTCTGAAAAGCTAACCAAAGCATCAAGTTCTATTCCACCTGGAAGTTAAAGAAAA
ATTTAACCAAAAATAATCCTTCTAAGATCAAGTTCTTCCTCCTTGGATTTCATATCCTGCCATG
AGATTTTTAATATCTGTAATGTGAGGGTTATCTCTTCTTTTGGAATTGTAGTTCCCCTGATATT
TTTAATTATGTATTGTAGGTTACCACTCTCAGAGGATCCTGCTTTGGCAATGGCTTTCTCAGTG
GCACGACGTGCAGCAGCTGTTCCACTGTTGCTTGTTAATGGAACGTATCGGAAAACAATTCGCA
CCTATCTCGATTCATCTATACTCCAGTATCAATTGCAAAGATTGGATCATTCCCTTAAAG
Conservation Information
Conserved circRNAs NA
PMCS 1.098368556
Functional Information
Coding potential Y
Potential coding position 25812594-25812335(+)
25813142-25812335(+)
Potential amino acid sequence MRDLKNELQSFDGEEYDEDHKRKAIDALKRMENWNLFSDTYEEFQNYTVARDTFLAHLGATLWG
SMRHIISPSLSDGAFHYFEKISFQLFFITQEKARNIKQLPVDLKAIKDGLSSLLLPSQKPLFSQ
TMLPLSEDPALAMAFSVARRAAAVPLLLVNGTYRKTIRTYLDSSILQYQLQRLDHSLKERSSSH
*
MGSRLCCYLHRNLYLVRPCYHSQRILLWQWLSQWHDVQQLFHCCLLMERIGKQFAPISIHLYSS
INCKDWIIPLKKDHQAIDILLAEIDIYELFAFKHCKGRKVKLALCEELDERMRDLKNELQSFDG
EEYDEDHKRKAIDALKRMENWNLFSDTYEEFQNYTVARDTFLAHLGATLWGSMRHIISPSLSDG
AFHYFEKISFQLFFITQEKARNIKQLPVDLKAIKDGLSSLLLPSQKPLFSQTMLPLSEDPALAM
AFSVARRAAAVPLLLVNGTYRKTIRTYLDSSILQYQLQRLDHSLKERSSSH*
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhu et al., 2019;He et al., 2020