Plant Circular RNA Database

Detail information of AT5G37310_circ_g.2

			
						 General Information
					
						CircRNA Name
						AT5G37310_circ_g.2
					
						ID in PlantcircBase
						ath_circ_041333
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 14773242-14775526  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, PcircRNA_finder
					
						Parent gene
						
							AT5G37310						
					
						Parent gene annotation
						
							Transmembrane 9 superfamily member 4
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT5G37310_circ_g.1 						
					
						Support reads
						1
					
						Tissues
						aerial, whole_plant
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G37310.1:5
AT5G37310.2:5

General Information
CircRNA Name	AT5G37310_circ_g.2
ID in PlantcircBase	ath_circ_041333
Alias	NA
Organism	Arabidpsis thaliana
Position	chr5: 14773242-14775526 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	CIRCexplorer, PcircRNA_finder
Parent gene	AT5G37310
Parent gene annotation	Transmembrane 9 superfamily member 4
Parent gene strand	-
Alternative splicing	AT5G37310_circ_g.1
Support reads	1
Tissues	aerial, whole_plant
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G37310.1:5 AT5G37310.2:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CACATAAACTTACAAAAAAATCACCTATGAAACTAAGCAATTTAACCATCCATACATACCTGAT
GAACAGAACGGAAGATCAAAGTATCGATATGTTTCActccaccaccactcatggtcttcagcag
caagttggaagtacgttaatgcaaccgtgataaaagcagtgactataacgagaataaggaagac
gatagaca

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTCCACCACCACTCATGGTCTTCAGCAGCAAGTTGGAAGTACGTTAATGCAACCGTGATAAAAG
CAGTGACTATAACGAGAATAAGGAAGACGATAGACAGAATACTATAGATGGTGTATATTCTGTG
ACCCCAAACACTGGCAAATATGTAGTAAAGCTCGATGTAAATGGCACTGAACGGTAAAAAACCA
GCCATAGCCATCTGCGGAAGTGTTCTCCGGTACCAACGCATTGGTGGGATCTCTCTTGGATATT
TTGTGGTACGACAAGGAGCTTGAAACTCGGATTTTCTGTTCTTCCCAGCAATACCTCCTAATAT
TAACAATGGTGAAGTAACCAGAGCCCATATAAGGAAAATAACCACAATTGTCCCAAATGGCAAC
GCTGCAGTGGCTTGGTAAGCAATCGCAACAGTATTAAGGAAGGAGAACGTGATCAAAAGAGGTC
CACAGAAGAGGCTTCCAGTCAGTATAACATTCCTAACCTGTCAAGACAATCAATGAACGTCTTT
CTTAATCAGTTTACTGAAATTGTAAAACTGTTCATTCAATTTGTAGAACTCCATTCATCTGGCA
TCAAAACCTTTTAGGCCAATATGAAAAACAGAAAAATATAAAATATATGAACCAATTGCAAATG
AGAACAAGATGCACGAGATAAGCCATAGCTTTTCCTCAAACTGCTAAAATAAATGTCCAGAACT
GTAAGCCAAAACCCATCATGCAAAAAGAAGTAGAAAACTCAAAAATCTAATAATCTCGTATGGC
ATATAAGGTCAGAACACAACTATATACATATAGTACATAACTATGATACACACATATTTTTCCA
TATGAAACAAAGGTAGTAAGTTTGATCAAAAACAGAGGTAGCAAAGGAACAAAACCATGTTGGT
GTTCAATGCTAAACCCAATTGACTGCAGTACTGTTTGTCTACTTTTCACCAAGTATCACTTAAG
AGCTTTACACAGCCACTTTTATCAGATGTGCAGAAACTATACCAGCTGATTTCACTAAATGCTA
CCATGGTGGAAGACGTTTGACTGAATACTTAGATATGAATTTAAAAAACAATCCTAAGACAAAC
AATAACCTATAAAATGGCATCCATGCTTACCCAGTTAGTTCCTTCTAGCTGGCAATAGAAAGAA
GCAGCAGTATATCCGGCAATCCCTGAAGTAAGAGCATATATGACCACTAATGCAGTAAACAATG
CTCCACGGTTGTAGGGATAAAAGACACCGACTAATGCAAGCATGAAGATGAAAACAGCTCTGCA
TACAAATAAAAAAACGTGTTACCAAGTGAAAACAGCATGCCAGGAAGAGCACCAAGAGTCGACA
ACTCTATGTGAAAACGTACAGTGTAAACAATTGTGTGCCAGAACCAAGGGCTGCAGCCAGCAGG
GATTTGTGTTTGGGGAACCTAAATACATCACCATGGATCAATTTCCACCCAGTCTCTTCTTGGT
CATCAACTGCCTCTTCATCATGTGCATACCTACGAAGTAAAAAAGCTACTAGATATATTTAAAG
TCACAAATTCAATAATGCTACGCACTCTAGCTAATATCTTACTTGACAAAATCATTCTTCAAGA
CTCGCATGAGAATCGTCGCAAGGAAACCAGTCAAGAGAAGAACTGTGACACATGAATTAATGAT
GGAGAACCAGTGGATTTCCAAGTGATGTGGCATTGATGAAGCCAGTGAGTATTTCTCCATCCTC
TTCTCGAATGGAATTTCAGTTTCCTTCCATCGAACTGTGTATGTGAAATCCACTTGGACTTCCT
TGTCCTCAGTCAAGTCCACAAGGAAATTCTGGTCTGTCCTCACGATAATTTCGATAACACGGTC
CTTATTATAGAAAATCTCAAACTGCAGATGATTGAAGAGATAATATTTATACTCAGATGGGTCA
GTCTTTCCCTCCTTGACAACTTTTCCAAGGAATCCCCAAATGGGCAAGTCATCATAATACATCT
GAAAGTAATAATCTTTCGCAATCACATCACGAAACTTAGCAACGTCTTCTCTACTCAACCTCTT
TCTACATGCAACTTCAGAGTTCTTCTCACCCAAAAACTCAAGTTTGTAAGGTGCACTGACTAAT
CGATCTCCATTAAGAACTTCCCCTAGAGCCTCCTTCTTCTCCTTAACAGGAGCTGTAAAGAATA
TCCCTCAGCCACATAAACTTACAAAAAAATCACCTATGAAACTAAGCAATTTAACCATCCATAC
ATACCTGATGAACAGAACGGAAGATCAAAGTATCGATATGTTTCA
						
					

			
		

Sequences
Splice junction sequence	CACATAAACTTACAAAAAAATCACCTATGAAACTAAGCAATTTAACCATCCATACATACCTGAT GAACAGAACGGAAGATCAAAGTATCGATATGTTTCActccaccaccactcatggtcttcagcag caagttggaagtacgttaatgcaaccgtgataaaagcagtgactataacgagaataaggaagac gatagaca
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTCCACCACCACTCATGGTCTTCAGCAGCAAGTTGGAAGTACGTTAATGCAACCGTGATAAAAG CAGTGACTATAACGAGAATAAGGAAGACGATAGACAGAATACTATAGATGGTGTATATTCTGTG ACCCCAAACACTGGCAAATATGTAGTAAAGCTCGATGTAAATGGCACTGAACGGTAAAAAACCA GCCATAGCCATCTGCGGAAGTGTTCTCCGGTACCAACGCATTGGTGGGATCTCTCTTGGATATT TTGTGGTACGACAAGGAGCTTGAAACTCGGATTTTCTGTTCTTCCCAGCAATACCTCCTAATAT TAACAATGGTGAAGTAACCAGAGCCCATATAAGGAAAATAACCACAATTGTCCCAAATGGCAAC GCTGCAGTGGCTTGGTAAGCAATCGCAACAGTATTAAGGAAGGAGAACGTGATCAAAAGAGGTC CACAGAAGAGGCTTCCAGTCAGTATAACATTCCTAACCTGTCAAGACAATCAATGAACGTCTTT CTTAATCAGTTTACTGAAATTGTAAAACTGTTCATTCAATTTGTAGAACTCCATTCATCTGGCA TCAAAACCTTTTAGGCCAATATGAAAAACAGAAAAATATAAAATATATGAACCAATTGCAAATG AGAACAAGATGCACGAGATAAGCCATAGCTTTTCCTCAAACTGCTAAAATAAATGTCCAGAACT GTAAGCCAAAACCCATCATGCAAAAAGAAGTAGAAAACTCAAAAATCTAATAATCTCGTATGGC ATATAAGGTCAGAACACAACTATATACATATAGTACATAACTATGATACACACATATTTTTCCA TATGAAACAAAGGTAGTAAGTTTGATCAAAAACAGAGGTAGCAAAGGAACAAAACCATGTTGGT GTTCAATGCTAAACCCAATTGACTGCAGTACTGTTTGTCTACTTTTCACCAAGTATCACTTAAG AGCTTTACACAGCCACTTTTATCAGATGTGCAGAAACTATACCAGCTGATTTCACTAAATGCTA CCATGGTGGAAGACGTTTGACTGAATACTTAGATATGAATTTAAAAAACAATCCTAAGACAAAC AATAACCTATAAAATGGCATCCATGCTTACCCAGTTAGTTCCTTCTAGCTGGCAATAGAAAGAA GCAGCAGTATATCCGGCAATCCCTGAAGTAAGAGCATATATGACCACTAATGCAGTAAACAATG CTCCACGGTTGTAGGGATAAAAGACACCGACTAATGCAAGCATGAAGATGAAAACAGCTCTGCA TACAAATAAAAAAACGTGTTACCAAGTGAAAACAGCATGCCAGGAAGAGCACCAAGAGTCGACA ACTCTATGTGAAAACGTACAGTGTAAACAATTGTGTGCCAGAACCAAGGGCTGCAGCCAGCAGG GATTTGTGTTTGGGGAACCTAAATACATCACCATGGATCAATTTCCACCCAGTCTCTTCTTGGT CATCAACTGCCTCTTCATCATGTGCATACCTACGAAGTAAAAAAGCTACTAGATATATTTAAAG TCACAAATTCAATAATGCTACGCACTCTAGCTAATATCTTACTTGACAAAATCATTCTTCAAGA CTCGCATGAGAATCGTCGCAAGGAAACCAGTCAAGAGAAGAACTGTGACACATGAATTAATGAT GGAGAACCAGTGGATTTCCAAGTGATGTGGCATTGATGAAGCCAGTGAGTATTTCTCCATCCTC TTCTCGAATGGAATTTCAGTTTCCTTCCATCGAACTGTGTATGTGAAATCCACTTGGACTTCCT TGTCCTCAGTCAAGTCCACAAGGAAATTCTGGTCTGTCCTCACGATAATTTCGATAACACGGTC CTTATTATAGAAAATCTCAAACTGCAGATGATTGAAGAGATAATATTTATACTCAGATGGGTCA GTCTTTCCCTCCTTGACAACTTTTCCAAGGAATCCCCAAATGGGCAAGTCATCATAATACATCT GAAAGTAATAATCTTTCGCAATCACATCACGAAACTTAGCAACGTCTTCTCTACTCAACCTCTT TCTACATGCAACTTCAGAGTTCTTCTCACCCAAAAACTCAAGTTTGTAAGGTGCACTGACTAAT CGATCTCCATTAAGAACTTCCCCTAGAGCCTCCTTCTTCTCCTTAACAGGAGCTGTAAAGAATA TCCCTCAGCCACATAAACTTACAAAAAAATCACCTATGAAACTAAGCAATTTAACCATCCATAC ATACCTGATGAACAGAACGGAAGATCAAAGTATCGATATGTTTCA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.243997669

Conservation Information
Conserved circRNAs	NA
PMCS	0.243997669

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							14775224-14773244(-)
						
					

						Potential amino acid sequence
						
							MYYDDLPIWGFLGKVVKEGKTDPSEYKYYLFNHLQFEIFYNKDRVIEIIVRTDQNFLVDLTEDK
EVQVDFTYTVRWKETEIPFEKRMEKYSLASSMPHHLEIHWFSIINSCVTVLLLTGFLATILMRV
LKNDFVKYAHDEEAVDDQEETGWKLIHGDVFRFPKHKSLLAAALGSGTQLFTLAVFIFMLALVG
VFYPYNRGALFTALVVIYALTSGIAGYTAASFYCQLEGTNWVRNVILTGSLFCGPLLITFSFLN
TVAIAYQATAALPFGTIVVIFLIWALVTSPLLILGGIAGKNRKSEFQAPCRTTKYPREIPPMRW
YRRTLPQMAMAGFLPFSAIYIELYYIFASVWGHRIYTIYSILSIVFLILVIVTAFITVALTYFQ
LAAEDHEWWWSETYRYFDLPFCSSAPVKEKKEALGEVLNGDRLVSAPYKLEFLGEKNSEVACRK
RLSREDVAKFRDVIAKDYYFQMYYDDLPIWGFLGKVVKEGKTDPSEYKYYLFNHLQFEIFYNKD
RVIEIIVRTDQNFLVDLTEDKEVQVDFTYTVRWKETEIPFEKRMEKYSLASSMPHHLEIHWFSI
INSCVTVLLLTGFLATILMRVLKNDFVKYAHDEEAVDDQEETGWKLIHGDVFRFPKHKSLLAAA
LGSGTQLFTLAVFIFMLALVGVFYPYNRGALFTALVVIYALTSGIAGYTAASFYCQLEGTNWVR
NVILTGSLFCGPLLITFSFLNTVAIAYQATAALPFGTIVVIFLIWALVTSPLLILGGIAGKNRK
SEFQAPCRTTKYPREIPPMRWYRRTLPQMAMAGFLPFSAIYIELYYIFASVWGHRIYTIYSILS
IVFLILVIVTAFITVALTYFQLAAEDHEWWWSETYRYFDLPFCSSAPVKEKKEALGEVLNGDRL
VSAPYKLEFLGEKNSEVACRKRLSREDVAKFRDVIAKDYYFQMYYDDLPIWGFLGKVVKEGKTD
PSEYKYYLFNHLQFEIFYNKDRVIEIIVRTDQNFLVDLTEDKEVQVDFTYTVRWKETEIPFEKR
MEKYSLASSMPHHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFVKYAHDEEAVDDQEETG
WKLIHGDVFRFPKHKSLLAAALGSGTQLFTLAVFIFMLALVGVFYPYNRGALFTALVVIYALTS
GIAGYTAASFYCQLEGTNWVRNVILTGSLFCGPLLITFSFLNTVAIAYQATAALPFGTIVVIFL
IWALVTSPLLILGGIAGKNRKSEFQAPCRTTKYPREIPPMRWYRRTLPQMAMAGFLPFSAIYIE
LYYIFASVWGHRIYTIYSILSIVFLILVIVTAFITVALTYFQLAAEDHEWWWSETYRYFDLPFC
SSAPVKEKKEALGEVLNGDRLVSAPYKLEFLGEKNSEVACRKRLSREDVAKFRDVIAKDYYFQM
YYDDLPIWGFLGKVVKEGKTDPSEYKYYLFNHLQFEIFYNKDRVIEIIVRTDQNFLVDLTEDKE
VQVDFTYTVRWKETEIPFEKRMEKYSLASSMPHHLEIHWFSIINSCVTVLLLTGFLATILMRVL
KNDFVKYAHDEEAVDDQEETGWKLIHGDVFRFPKHKSLLAAALGSGTQLFTLAVFIFMLALVGV
FYPYNRGALFTALVVIYALTSGIAGYTAASFYCQLEGTNWVRNVILTGSLFCGPLLITFSFLNT
VAIAYQATAALPFGTIVVIFLIWALVTSPLLILGGIAGKNRKSEFQAPCRTTKYPREIPPMRWY
RRTLPQMAMAGFLPFSAIYIELYYIFASVWGHRIYTIYSILSIVFLILVIVTAFITVALTYFQL
AAEDHEWWW(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	14775224-14773244(-)
Potential amino acid sequence	MYYDDLPIWGFLGKVVKEGKTDPSEYKYYLFNHLQFEIFYNKDRVIEIIVRTDQNFLVDLTEDK EVQVDFTYTVRWKETEIPFEKRMEKYSLASSMPHHLEIHWFSIINSCVTVLLLTGFLATILMRV LKNDFVKYAHDEEAVDDQEETGWKLIHGDVFRFPKHKSLLAAALGSGTQLFTLAVFIFMLALVG VFYPYNRGALFTALVVIYALTSGIAGYTAASFYCQLEGTNWVRNVILTGSLFCGPLLITFSFLN TVAIAYQATAALPFGTIVVIFLIWALVTSPLLILGGIAGKNRKSEFQAPCRTTKYPREIPPMRW YRRTLPQMAMAGFLPFSAIYIELYYIFASVWGHRIYTIYSILSIVFLILVIVTAFITVALTYFQ LAAEDHEWWWSETYRYFDLPFCSSAPVKEKKEALGEVLNGDRLVSAPYKLEFLGEKNSEVACRK RLSREDVAKFRDVIAKDYYFQMYYDDLPIWGFLGKVVKEGKTDPSEYKYYLFNHLQFEIFYNKD RVIEIIVRTDQNFLVDLTEDKEVQVDFTYTVRWKETEIPFEKRMEKYSLASSMPHHLEIHWFSI INSCVTVLLLTGFLATILMRVLKNDFVKYAHDEEAVDDQEETGWKLIHGDVFRFPKHKSLLAAA LGSGTQLFTLAVFIFMLALVGVFYPYNRGALFTALVVIYALTSGIAGYTAASFYCQLEGTNWVR NVILTGSLFCGPLLITFSFLNTVAIAYQATAALPFGTIVVIFLIWALVTSPLLILGGIAGKNRK SEFQAPCRTTKYPREIPPMRWYRRTLPQMAMAGFLPFSAIYIELYYIFASVWGHRIYTIYSILS IVFLILVIVTAFITVALTYFQLAAEDHEWWWSETYRYFDLPFCSSAPVKEKKEALGEVLNGDRL VSAPYKLEFLGEKNSEVACRKRLSREDVAKFRDVIAKDYYFQMYYDDLPIWGFLGKVVKEGKTD PSEYKYYLFNHLQFEIFYNKDRVIEIIVRTDQNFLVDLTEDKEVQVDFTYTVRWKETEIPFEKR MEKYSLASSMPHHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFVKYAHDEEAVDDQEETG WKLIHGDVFRFPKHKSLLAAALGSGTQLFTLAVFIFMLALVGVFYPYNRGALFTALVVIYALTS GIAGYTAASFYCQLEGTNWVRNVILTGSLFCGPLLITFSFLNTVAIAYQATAALPFGTIVVIFL IWALVTSPLLILGGIAGKNRKSEFQAPCRTTKYPREIPPMRWYRRTLPQMAMAGFLPFSAIYIE LYYIFASVWGHRIYTIYSILSIVFLILVIVTAFITVALTYFQLAAEDHEWWWSETYRYFDLPFC SSAPVKEKKEALGEVLNGDRLVSAPYKLEFLGEKNSEVACRKRLSREDVAKFRDVIAKDYYFQM YYDDLPIWGFLGKVVKEGKTDPSEYKYYLFNHLQFEIFYNKDRVIEIIVRTDQNFLVDLTEDKE VQVDFTYTVRWKETEIPFEKRMEKYSLASSMPHHLEIHWFSIINSCVTVLLLTGFLATILMRVL KNDFVKYAHDEEAVDDQEETGWKLIHGDVFRFPKHKSLLAAALGSGTQLFTLAVFIFMLALVGV FYPYNRGALFTALVVIYALTSGIAGYTAASFYCQLEGTNWVRNVILTGSLFCGPLLITFSFLNT VAIAYQATAALPFGTIVVIFLIWALVTSPLLILGGIAGKNRKSEFQAPCRTTKYPREIPPMRWY RRTLPQMAMAGFLPFSAIYIELYYIFASVWGHRIYTIYSILSIVFLILVIVTAFITVALTYFQL AAEDHEWWW(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of AT5G37310_circ_g.2

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