Detail information of AT1G61250_circ_g.13


General Information
CircRNA Name AT1G61250_circ_g.13
ID in PlantcircBase ath_circ_008297
Alias NA
Organism Arabidpsis thaliana
Position chr1: 22587129-22587251  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT1G61250
Parent gene annotation Secretory carrier-associated membrane protein 3
Parent gene strand +
Alternative splicing AT1G61250_circ_g.2 AT1G61250_circ_g.3 AT1G61250_circ_g.4 AT1G61250_circ_g.5 AT1G61250_circ_g.6 AT1G61250_circ_g.7 AT1G61250_circ_g.8 AT1G61250_circ_g.9 AT1G61250_circ_g.10 AT1G61250_circ_g.11 AT1G61250_circ_g.12 AT1G61250_circ_g.14
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G61250.1:1
AT1G61250.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAAACGAAATTCCGGTTCATCTCCAAAGACTACAGTATGTTACCTTTGCAACGTATTTGGctg
gaatcgttattgaagtgaaaaactggccgcctttcttcccacttatccaccatgacatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGAATCGTTATTGAAGTGAAAAACTGGCCGCCTTTCTTCCCACTTATCCACCATGACATCGC
AAACGAAATTCCGGTTCATCTCCAAAGACTACAGTATGTTACCTTTGCAACGTATTTGG
Conservation Information
Conserved circRNAs NA
PMCS 0.235090989
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017