Detail information of PGSC0003DMG400003402_circ_igg.1


General Information
CircRNA Name PGSC0003DMG400003402_circ_igg.1
ID in PlantcircBase stu_circ_000762
Alias chr06:2281246|2285816
Organism Solanum tuberosum
Position chr6: 2281247-2285816  JBrowse»
Reference genome 3.0.38
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing PGSC0003DMG400003403_circ_ag.1 PGSC0003DMG400003402_circ_ag.1 PGSC0003DMG400003401_circ_ag.1 PGSC0003DMG400022035_circ_igg.1
Support reads NA
Tissues stem
Exon boundary   No-Yes
Splicing signals   GT-GA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTTTATCACTTCAAATGAAATTGAATCCAATGCAATTGTGGAAGATGAAAAATTGCAATCAAA
ACGTTGCTTGGGCTTTCAGGCAGGCTTATCGAGGAGacaggttcatcacggtcacgccagaaac
tgaagttctgaaagcgaagcaactgatgataggtactactttctgcttcatttctttttttaat
gcccttat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACAGGTTCATCACGGTCACGCCAGAAACTGAAGTTCTGAAAGCGAAGCAACTGATGATAGGTAC
TACTTTCTGCTTCATTTCTTTTTTTAATGCCCTTATTAGTGTATTTGCTTCATACACAAGAAGA
TTTGCAATAATGTACTTTATGATGGACTTGAGGAGTAACAATTTAAGCCACGCCAAAAAAAAAG
AAGAGATTATACAGGAACAACAATTTTGAAAGAACAAATTTTGGAATACCTAGCAAGACTACTG
GTTTTTAACCATAAAGCACACAAAATGAAGAAGAAAATAGGGAACACTGAACAAGAGTAGTGCA
GTAACAATTGATATCAATACAACCCTCCATCACTTATTCACCACAACAGAGTTGTCTGAGGATT
TATCTTGACCCTCTAAGGCTGATGTACTGGCAAAGAGAATTGTATCTCGTAATCCTTACATGCC
CTCTGCAAAGAAAATTACACTGGTCAATGTAATCGGAAAAAGAAAGAGAAGCTACTCCATTTTA
TGTGGCACTCCTTTTCTTTTTAGCATGTTTAAAAAAGAACAACGCCTTTGCATAATTGAAAATA
ATTTAATTATAAATTTCCCATTTTATCTTTGATGACATGCTTTTATAGCCACAAATATGACATG
GCATGTTTAAGACTAGAAGTTCCTTTCTTTTGTCAAACTCAGTGTCCAGTGAAACTCCACCGCA
TAAAATTAAATGGAATAGGTAATTAGTTCCGTCTATACTTACATATTTCCCAGGGTAAGAGCAC
TCACTATTTTTCACGCATGCTGTTTAAATTACGAGATATTATTCAGGCAAAGGACCTGTAAGTT
TGTGTTCTTCTCTGTCTAGTGGCTCTGATGTATCTCTCTGCCTAACTGGTTGTCCAGCTTACAC
TTAACGTTGCTTGACATGGACGTGACTGCAGGCAGTGGCGGAGCCACCTTTCAATGAGGGGGTT
CATCCGAACCCCCTTCGGCGTAAAATTATATTATTTATACATGATTAAAATCTTTTTTTAGATA
TATATAGTAGATGTCGAACCCCCTTAGGCTACTTCGTGTGTCTATTTTTTCAGATTTTGAACCC
CCTTGTTAAAAATCCTGGCTCCGCCACTGACTACAGGTGTTAGATTACATTGAAGATAGCGGTC
TTGAGGAGACTGCATAAGGAACTTCAAGAGCTTAGGGTGTTTCCTTCTGGTCCATTTGCTCCAG
GACAAATGTATCCTTGACAGAGCAAGAGCTACAGCTGCCCTAAGCTTCAGTCAGTTTTATACTT
CTGCTGCCAAATGACAAATGACGCCTTGGTTACTATTGCTAGGAACCATTCTAATATCATCCAA
TTTTGTTTGTGTATTATCAAACCTCAAAATCCTGTAACCCTTGAACCACTTGATGCTGATTTTG
GGGCCATTATTCAACACTGCAAGGAATTGTGGCAACTCTCTCTTTCTGACCTCCTTACAGACCG
TGTGTTTGAGTACATCAGGGTCCATGCTAAGAAGTTAGAGATGCTTTCTTTAGCTTTTCCGGGG
GATAACCATCTAGACCTCCACTACATACTCTCTGGTGTGAGAGCCTCCGCAAGTTGGAGATTAG
AGACTGCCCCTTAGGCGATGAGGCTCTGTTGTCCAATGCTGCAAAGCTGGAGACAGTGCGATCC
CTTTGGATGCCTGATTGTTCAGTAAGTTTTGAAGCATGTAAGCTGCTAGCTAGCTCAGAAGTTG
CCAGGGCTCAGAATTGAGCATGGCCATTGTCACAACCACAACCAGTGGTAGAGCCACATATACT
TGAGGGATGTCAATTAACACTCCTTCGTCTGAATATTACAATTGTATAGCTTGGTAAAAATATT
TCTTTTATGTATAAATATGCCAACACCTCTTGACTTCTACACAATTTTACTTTTTATATTTTAA
CTTCTCTTGGTAAAAATTATGACTTTGTCACTAGTCCCAACCTGTTTTTGGCAACTAGCCAAAC
AAAAAGGGCTCTTGGAGCAACATCAAATCTCTTAAGATTCAAGACACATAAACGTCTTGCTTTT
AATAGTATATTGACAGTTGCGTTTGACATAAAACAAATAATGTGTTATCTCGAAAACTATTATG
GGGTTGGAATGAGTTGGGGAGTGGGAATTGATCTCTGATCCTCTGGGCGGATAATTCAAACATT
CAATCATGTACACTATTTAGTCTTCTTTTAGCATACGTATATTATATCAATTTTAAAAAATATA
TCCACAAAATACTTAATTTTACAAAGAGATCATGGGTTCAGGTACCCTATATTTAGGCTATAAA
CTCACCCTTGATAGGGGTCAAGGGGTGGAGATTGACGGATTAGATGAATGGAAAGGATACTATA
CGTTTATTTTTATTTATTATTTAATTATCCTATTTCATTTTTTATCCGACAATTTCATAAAGTT
CTACCACGTACACTACTTTCTTATAGGTTTTTTAACTCAAATGATACAATCTATTCAAACACAA
TATACATTAAAACAATACAGTACAATACAATATAATATAATAACTTATGAACAACTATATCCAA
GCAAAGTGTTAAAAGAGATTCCTTCAAAATTAGGTCACACTGAAATTATCGAGCAACTCAGTGA
GAGAAATTTGCTTTAGCAATGGCGATGAGCAGAATGTCTCTGCGGAAATGCAATGGTATTCTCT
CTAACTCTTCCTTTCATATCTCCTATTCTTATTTTTCATCATATTCACGCAGTAGTGAAGTAAA
GGTAAAGGGTAGAGTTGGGTTAAATAGTTGCAGTTTTGAGTGTTTAGATGATGCTGTGAATCTA
TTCCGTCAAATGGTTAGAATGAAGCCTCTTCCTTCAGTTGTCGATTTCTCTAAATTGTTTAAGA
CTATGATAAGTATGAAGCATTACTCAGCTGTCCTCTCTCTTTTCCGACAAATGCTGAAATTGGG
CATTCCAATTAGTGATTTCATCTTGAATAGTGTGATTAATAGTTATTGCCTGATGCATCATGCT
GATCTTGGATTTTCGGTGTTACCTATTTACTTGAAGAATGGCATTCCGTTTAATAATGTTCCCT
TTACAACTCTAGTAAGGGGAATCTTTGCTGAAAATAAGGTTAAAGATGCTGTTGAATTGTTCAA
AAAATTGGTGAGAGACAAGATTTGTGAGCCCAATGAATTCATGTATGCAACTGTAATGAATGGG
CTCAGCAAAAGGGGTCATACTCAGAAAACTTTAAGTTTGCTCCGGTTAATGGAACAAGGTAACA
CTGAGCCCAACATATATATCTACAGCATTGTTATAGATGCTCTTTGCAAAGATGGAAACTTAGA
TGCTGCAATCAACATTCTGAACGAGATGAAGCAGAAAGACATTCCTCCAAACATAGTCACATAT
AATTCAATAATTGATGGTTTGTGTAAGCTTGGTCAGTGGGAAAGGTTAAAACTTTGTTCTCAGA
GATGGTGAACCTTAATATGTATCCAGATGTGCGCACCTTCACCATACTAACAGATGGACTATGC
AAAGAGGGGAAAATTGAAGATGCCGAGGAAGTAATGAAACACATGGTTGAAAAGGGTGTTGAGC
CTAATGTAATCACCTACAATGTGATAATGGATGGATATTGCTTGCGTGGTCAACTAGATAGAGC
TAGGAGAATTTTTGATATCTTGATAGATAAGGGCATTGAGCCTAACATTTTTACCTATAACATA
CTAATAAATGGATACTGTAAGAAAAAGAAACTCGCCGAGGCCATGCAATTATTTTGTGAAATTT
CTCAAAAGGGATCAAAGCCTAATATTGTTACCTACAATACTATCTTGCAAGGCCTGTTTGAAGT
TGGAAGAATTGGTGTTGCAAACCAATTGTTTGTTGAGATGGTATCTACTGGGCCAGTACCTAAC
TTATCCATTTATCACACTTTGCTTGATGGTTATTTTAAGTATGGACTTGTTGAAGAAGCTATGT
CACTCTTTAATAAGTTGGAAAAAAACAAAGAAAATATTGATATTGAATCTTACAATATTATCAT
TAATGGATTGTCTAAAAACGGTGAACTCAATAAAGCTCGCGCTATTTTTGAGAAGCTTTCCTCA
ATGGGATTGCTTGTGAATGTGAGAACATACACTACAATGATAACTGGATTTTGTCTACAAGGGT
TGTTAGATGAAGCTAAGGATATGCTTAGAGAAATAGAAGAGAACGGTTGTTTTCCAAACAATGT
CACTTACAATGTTATCGTGCGAGGATATCTTAGGTGCAGGAAAATAAATGAAATGGTAACTTTA
ATGAAGGAAATGACTGGAAGGGGCTTCTCATTTGACGCAACTACAGCTGAGTTACTGGTAAAGG
ATATAAGTGAGAATCCTTCCATCCTTGACATGATACCAGAGCTTCACGCGGAAAACAAGAAGTG
AATATTGCTTTCCTGTTGGTTTATTCGGCTATGTTATAACTTTGATACATTTTTGGTTTATCAC
TTCAAATGAAATTGAATCCAATGCAATTGTGGAAGATGAAAAATTGCAATCAAAACGTTGCTTG
GGCTTTCAGGCAGGCTTATCGAGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.123274072
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2018