Detail information of BGIOSGA003586_circ_g.3


General Information
CircRNA Name BGIOSGA003586_circ_g.3
ID in PlantcircBase osi_circ_009514
Alias Chr01:17124755_17126645(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 18418119-18420009  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA003586
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA003586_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA003586-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTACAGAACAATGCAGCTTGAAGTCTTAGCTGGTATTGATTCCCTTGTAACTACGGTTATTGA
AAGTGGTCTTCGGTTCCAAGTTGATCTTTCAACAGTggttgtgttggaccatgaaactaacaag
gatggatcttcatcctacgagcttgtgcaatgccaattgaccttgttctacaattactggccaa
tgaatgag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTGTGTTGGACCATGAAACTAACAAGGATGGATCTTCATCCTACGAGCTTGTGCAATGCCAA
TTGACCTTGTTCTACAATTACTGGCCAATGAATGAGGTATTTTGCCACCTGTTTACAGTTGATG
GTCTAAGCATCATTTTCTTTCAGTTCTCTTCATCTCTTGTTATTATTTTTGTCCAAGTATTTGC
TGTTTTTTGTGCCAGTGCATTTTTTTGATTAGGTCATTATACCAACGGCTTCCTTTGTTATCTA
ATGCCAGTGTTGTCCTTGAGATGTTCTAGTCTCCAGTTGTATCCCTAATCCCTAATATTATAGG
ATACACATGGATTTAAACACAAAGAATCAGTTAGCAGAAGTGTGAGCCAACTACTATCATGAGT
TGGCGATTGATTGAAAGGATCAATCATCAAAGTTGGTTTGACTATGTGCAGTAAATAGCCATTC
ATTTTGTGTTTTCAACCTTCTGGGCTTCTGTCTGTTGATCTGGAAGCCATAAATTATATATATG
CTAAGAACAACATCTTGCTGCTGTTCAATTTGCTGAAACCGGCCAAAGTAAGAAACATTGTTAC
AGCTGATAAATGTAAACCATCTTAGTGCAAGTGTTGCATGTCACATGTAAAAAAAAATACAGAG
GTGAAAGACTTTATCCAGGAGAAAACAAAATATGAGTTGGTTCTTACGGGCAGTGTTACTTAGA
CTTGGCCAGACTACTTGTCTTGTTTGACATGTGTCACAAGTGGCTGATACTTAGGTGCCTGGGT
CAATCTGACCAAGGTGGGTAAGATGAACCATTTTACCTCCTTACCAACTGGGCTATGCTCAGTT
CCTTTGAGACACCTTTTTTTAGTTCTAATGGTATTTACCCTTGTGGCTTACCTTTTGTTCTAGA
ATAAAATTATCCAATTTCTGTAGATTTAAAATAATGCTTGTTTAATTTACTGTATTGTTTTCAA
GTTCTTCAAAGTCTGTAGAATTCTTTCTTTTCAAGCTTCTCATTTGTGTCAGTATCTGATGCTT
CTGTACTGTCCAGGTAACACTGCCTTTGCAAATACCGGATACAGACCAAAAGTTCAGTCTGTAC
AGGTTAGATTGAATTGTCTCAAGATCAGAGTCTGGTCCCAGTTTTCTCATAGATGATTGGTCTA
CTCTGTTCTTGCTTCAAAGATGTGACAACATAGAAATGCAATTGAAAACTCAGTCGTACAAATG
CATTATCGAGGCACAAATATGAATTGTGGGATTACTAATTAACTTTTAGGCAGCACAAATTTCA
ACTCCACAGATTTTGTTTTCAATCCAAATGCTGTATAATGGTTTGATCTACCGAAATGTTTAGA
TATTAAACTGTATGTTCCAGGAGCATGAGGACTGTATTAGCATGTCATCACATTGTTACTTGTG
GGGTCTATTAGATATGTTGATCAACATTGCTTCACATGGAAAAAAATAAATATTCTTATGCACC
ATGCTCGTTGTCTGTTCACTTTCTGCTGCTTAACTGTTTTGATTGAATCTTACTTTTTGTAGAT
TTTAGAGGAAATACTCCCAGAAGGAATAATTGTTCCTACAGGGTTTGAGACAGTAGGGCATATT
GCACACTTGAACTTGAGGGATGACCATTTACCTTACAAGAAGCTTATTGCTCAGGTAATATCTA
ATTGCATGATAGCTTCCATTCTTGAGTATGTTTTCTTGTGCTCTAACATTTGACATGCAGGTGG
TACTGGACAAAAACAAGCCAAAGATCCAAACTGTTGTCAATAAGATTGATGCTATTCAAAATGA
CTACAGAACAATGCAGCTTGAAGTCTTAGCTGGTATTGATTCCCTTGTAACTACGGTTATTGAA
AGTGGTCTTCGGTTCCAAGTTGATCTTTCAACAGT
Conservation Information
Conserved circRNAs osa_circ_001795
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021