Detail information of BGIOSGA032071_circ_g.2


General Information
CircRNA Name BGIOSGA032071_circ_g.2
ID in PlantcircBase osi_circ_008885
Alias Chr10:12937474_12938286(MH63RS2), Chr10:13268269_13269081(ZS97RS2), Chr10:12937474_12938286(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 9521501-9522313  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA032071
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA032071_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA032071-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAAATGATTCAAGTCAACTGCTAATTTCCTATGCTCCATTGAAATATCCTCAATGGAAGTTTT
ACCAGTCGAATGATTCTCTAAAGATGGCTCACACTCcctctggaaaaggatgtctgttttcttc
tttgcttggagtgcttctgctagttcgagttccaaagcaagtactctttccaaggcattgccag
aaccagga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCTGGAAAAGGATGTCTGTTTTCTTCTTTGCTTGGAGTGCTTCTGCTAGTTCGAGTTCCAAA
GCAAGTACTCTTTCCAAGGCATTGCCAGAACCAGGAAGCTCTTTAAATGAAGGAAAAATGCTCC
TTAAATGTTCATTTGCCTAGAAAGTGCCATATTAGCAAGAATAAGGTAAATGCCATGCCAGTTC
ATGTTTAATGGTACAACAGAAAGGGGGAGACATGCATACCATATCAAGCTGTGATAATGCCCTC
TCCAAACCACTGAGTGATGGGTCAATTAGATTGATGTCCAGGGGAAGAAGAGGAGAAAGATTCT
CATTTTTCAGTCTCTCCAACTGCATATGCAACACAAGAAATGTCTATAAACTTGTTATCTGTAT
CATGCCAAGTCTATACTGTAAAATTTCATAGTCCTTAGTTGTGTGTATACACACAGGTATGCAT
GTTACATATACAACAAGCACTTTATATTTCTGATACATATATCGATATCTCAGCACCCTGATAT
AGGCTCAAATAATTACAAACCTTCCAGACATGCGGCAATTGAATACACAACTAACTATATTGCT
TTTTGTCAAGTAAGAAAAGCCATAATTTTTTTTCAGCAGGTACCCAGGGATATATCCAGTCGTC
TAAAAACTTGTAAGAATGCAATTTGTGTTTGAAGAAATAATACACCAAGAGAAGTTTTCACATA
CCTCCTGATGGAAATGATTCAAGTCAACTGCTAATTTCCTATGCTCCATTGAAATATCCTCAAT
GGAAGTTTTACCAGTCGAATGATTCTCTAAAGATGGCTCACACTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021