Detail information of BGIOSGA013378_circ_g.1


General Information
CircRNA Name BGIOSGA013378_circ_g.1
ID in PlantcircBase osi_circ_013459
Alias Chr03:30792566_30793917(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 31983831-31985182  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA013378
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA013378_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA013378-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAACATGCTATGCGAAGGGCAAGAGGAACGGGTGGACGCTTCCTGAACACAAAGAAAAATGAAG
ATGGTGCTCCCAGTGAGAAAGCCGAACCAAACAAAGgatggaagcactggtcaagaaaagcatc
atgcaacatcgcagatgactgctttggcatcagactatttaacaccattttcacagctggaact
aaaccaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATGGAAGCACTGGTCAAGAAAAGCATCATGCAACATCGCAGATGACTGCTTTGGCATCAGACT
ATTTAACACCATTTTCACAGCTGGAACTAAACCAACCAATTGTATGCATTCTTTCCTTGTTGAG
TTTCTGTTTCTTATAGATCTTGTTGTGTCTGCAACTCGTGTATACTTTTCCCTGTCAATGTGCT
CATTTTCTCATGCTCATATCGGTCATTGTGCAGGCTTCGGCAGCATACCAGTACCCTGACTCTT
ACTATATGGGCATGGTTGGTCCCTATGGACCTCAAGCTATGGTACCTTTTTCCTTGCCAGTTTA
AATTATCATAAATCGTCTCCTGCCTGGTATGCAATCCTTACTCTCTTGGAGTATGAGATGCAAT
TTTGGATCTGAAATATTGAAGAACTGCGGATATTGGAGCAGCTGTCTATCACTCTACCTTAGTG
ATTTCCCACAAAGGGCTGCTGAAATTGCAGCGCCCTATTTTAGCTTTTTTCTAGTTTTGTATAA
ACCATATTTTTTTAGACAGCTACTAGCATTTACATTAGGAAACACCAATAGCCAGAGGGATTAA
GATCAAGAAGACAGACAGCAGGCATGGGCACAGAACTGCACAACTGATAGAGTAACAAGACCAT
GGATACACCTGAACCAAAAACGGACTTTGTGATTACCAGAAATTTGGTTGCTTTTGTAGTATAT
GGAAGCCTGAAAGATCTGAATGCTCAAATGTCTTTAGGTTGACTCCACCACTTTGGCTAGACTT
AACGTGGTTTAACTTTTATAAAGGTTGAATATTTACTAAAACTGTCCTTAGAGAGTTGCTGAAC
TTTCTGCATTTTTGTTTCCTGCAGTCCGCACAGACTCATTTCCAGCTACCTGGATTAACTCACT
CTCGTATGCCATTGCCTCTTGAAATATCTGAGGAGCCTGTTTATGTAAATGCTAAGCAATATCA
TGGAATTTTAAGACGGAGGCAGTCACGTGCGAAGGCTGAACTTGAGAAAAAAGTTGTTAAATCA
AGAAAGGTTAGTGAAGTTATATCTTGGTTCTCGCCTCCTGCTAATTCTGGAATTTCCTCCTCTA
GATCGAGTGTTGAGTTTTCAGGATGATCCTTCCGTGTCCTGGTTGGATGTCTCCCATTTACTGA
AGTGTAGAGCTCGATAATTTGTTAAGCACTGGCAGTGTTCTGTAGTGATAGCGGAATTTGGTGT
TTGATATTGCAGCCCTATCTTCATGAGTCTCGTCATCAACATGCTATGCGAAGGGCAAGAGGAA
CGGGTGGACGCTTCCTGAACACAAAGAAAAATGAAGATGGTGCTCCCAGTGAGAAAGCCGAACC
AAACAAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021