Detail information of BGIOSGA028699_circ_igg.1


General Information
CircRNA Name BGIOSGA028699_circ_igg.1
ID in PlantcircBase osi_circ_017904
Alias Chr08:21963253_21966955(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr8: 21713919-21717621  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA028698_circ_ig.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCTTCGAGCTTTTCCCCTGGTGAGGAGATCTGCCAACACCGTGAACGAATCTCCAATCTATGT
GCTGGCTTACCACTTGCAATCGATGTGCTCAGTGCCcaattgctctctggaaacatcatggatg
acacaggaacttatttgtctggaagaccatacttctttgtagagatcacaatagaacttgatta
actaatag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAATTGCTCTCTGGAAACATCATGGATGACACAGGAACTTATTTGTCTGGAAGACCATACTTCT
TTGTAGAGATCACAATAGAACTTGATTAACTAATAGTGTATCTGCATAAAAAATAACCAGCACA
ATCAGAGTTTACATTTAGCAGCAATTTAATACATTGGAGTTTTTTTTACTCATTTCCATAATTG
AATGCTAAAAACATTATCCTGCAAGATACAGTTGATACTACCAGTGCCTAGAAATTGAACTCAG
ATCACTCCATGAACATGAATGGTCAAATAAAAAAAACAAACAATGTAGTTGCTGATAAGTTTGT
GGATAGAAAACAATGATGACCAGTTCAAATAGTTGTGAGCAAGGAATCTTTTGATTCTTATTGC
AGGTAGTAGACTAACAACCATATCCCAATCTGGAATCCTGGATAGGACAAAACAGAAGTTGAGA
AATTCTAACAAGTTTGAGACAGGAATGTTTGGTTATTAGACATCACCAAGAATCATCAACATGA
CATATTTCAAATTGAAATACCAACTTTCACAAGATATCGATAATTTACGGTCTTATGTCGCTTA
TACCTTCATGATCATGTTTATGATTGCTTCCAATACTCCCTCCATTATTTCTTATTTGGCATTC
CAGAATATGTAGCATCCTAAAGTTTGACCATCAATGGTTTTAAAATAATCTAGACTGGGTTAGG
AACTGTTCTAAATAGGCTAGATTTGTCACTGAAAATATGTTCACAATATTTTTCATTTTACTAT
AATAATACAATAAAGTTATAAAAAAGATACAGTCAAAGTTACATCTCAGAGGCTTAAAAAAAGT
TAATAATATCAAATAAAAATGAACAGAGTGAGTAGTTAGTTTTGCAACCAAGGGAGCAACTGTA
TCTGCTTGAACTGATCATCAAATGCACCAAACTCTAACAAAGCAACAGCTTTGCTGGAACTGTT
GACTACCTCTCCTTCATTCTTCATATCAGCACCAGTTGCTCTTTTCAGTCAAGATCACACAAAG
CTTTTCTCATAAAAATCATATTCGTTGGATAAACAAGGGAAACTTTGAAATAATGATCTGGTCT
GAAGTTCTGTTGTTTGTGGCAAAACATCTTGCTTATTAGCATAATCTACTATGCAGAAGAAGTT
GCTAGCTCGAACTCCATATTCATACTGAAAATTATGCTGCTTCTGAGTATTTCTTAAGTCAGCA
ACCTCTGTGTATACCTAATCTGAAAAAGAAAAACTCATTTAGTATGTCGCTGCCCTTATTGTGG
ATATAATAACAACAAAGATTCACAGTTCAAACAAGCTAAGCAATAGTTTTGATTCTTTGGGGAA
GTTCTAGATTGGAGTCACGAATACTCGTTGACAAACCATAGAAAGTTGGTAGTTTGGGACTTGG
GAGGAGATAACCAATGGTTCCATCAAACAAAGTATCAAAAAGTTACACTCAAGTATCAAAACAA
GTTTCATAGTGTTTCAAGCAAGTTTCAACATAGTCTTCTCTGAGTTTCAACTAAGTTTCAAGTG
TAAAACCTACTTTTTAAGTTAGAATTACGGCATCTTGTCAGATCGATAACAATCCTCTTTAGTC
TTGAGAGTGTTATGTTAAATCCTGAAAAGTTATCATGCAAGTCTCTATATGCTTCAATGGACAT
TCCTTTATGCAATCCATGGCATCAAATTTAAACAAAATTACTGATAAAAGCTTAATGTTGTGTC
AATACTACCATAAAATTATTGTGCTGCAAGATGACAAAATCAATTACTACTGTCAATTTTTAAG
CTGCTAAATACTGTTAATTTGCACAAGAAAGATTTTTAAAGCTCAAATGCAACAAGGTACATAT
TTAGCAGGTCATCCACGGCTGCATCTCATTAAAACAATCCTGTGTGCTCTTTGAAGCAAGAAAG
TAGTTTGTATTCATACAAGACATCATGCTATGCCAAGGAATTTAATTTCGTGTGAATTAGGGCA
AGTATATATGAGTAAAGGTCGAATCGTGTAAATTAAAATTCTTACAACATAAACATAAATAGTT
GAAAATGATGTGAACAGAAACTGATGCCACATAAGAGACAAAATAAAGATGGCTTTGTTAACAG
AGACAACTAGAATAATTGTCAGCAGATGTGTACTCATCAAAGAATAATCATGGGACAACTTGGT
GAGTATAACAAAATTTTTATATAGCCTTTTGATGTATGACAACAGGAGTTGTTCCTAAAGTAAA
CTCAGCAGTTAGCAGACCAGCTATTTCGTCTGAATACAAAAAAGGTGGTCCAATTATTCACTTT
TGCTTGGGAGTTTTATATCACTTATTTTATTAGATGATAAAAAAAAGGAACTGAAAAGAGAAAC
TAGCGACTACTGGTCTCTTCACCTTTTAATTTAAGCACCAAACCACCCATCACTCATTCAACCT
TAATTATGCATCCACCTCTTTTGGGCATATTGACCACTCCCTTAGAAGATATATCTTGTTCTGC
TACATGCAGTAGCCTACTTGAAAGTTGCAATTTCCTCATAACTGCAGGCTTGCAACTTTGCAAG
AATTTGTCCATCATGGAGATAGGTCTTACACTGGGAAGAGGTGCAGCAGAAACTGTTGTGAGGC
CTGCATTTGACAAAGTGCAGTACTGGATTGAGCTGCTACAAGGAAAACACACAAGTACTGAAGA
AATGGTGAATGAATTGGATATCTTGGAAGGCTTGATCAAAGATACAGATAGCAGCAGCGCAATC
CACACACTCAAGGCAGCCAGAGGCCAAGCAGAAGACTTGTGTGCAAGTATTAGAGATGTTATTG
ATGACGCCAAGAGATTTGCAAGGTATAATCACCAACATGTTCCACTCAGATGCATCCGGAAATA
TACCCATAACTTAGTCGGCAAGCCTTCCATTTGTGAGACTGCTGAGAGGATAGTGAAGCTCCGC
AGCCAAGTAAGGCGGCTCCAAGAGATACTAACACCGTTTGTAGGCCAAGGTATGGTACCCACAA
GTGCACAAGCAGGAAGGCTGCAACATCGCCATGTTGCACATGCCGAGGGTCATTGGGAGGGCAT
GGAAGAGCCGAAAACATCATTGTTCCAGTATGTATTAGGCAGGGAGAGTCACCGACAAATGGTT
GCGCTGGTAGGGATGCCAGGCGTAGGAAAGACTTCACTTGCTCGATATGTTTATGAGGACAACA
AAGTAAAGGGGCATTTTAACTGCCATGCTTGGATGACAGTGGAAGAGTCTTGTGCAACAAAACA
ACTTTTGCTGGGAATGATTAGCAGACTGTATGAAGAGGCGAATGTCAGGCTACCCGATGCAATC
AATATAATGGATGAAGATGAGCTCAGTGGCATGATACAGCGGTTTCTGAAGCAAGAAGAAAGAA
GGTATGTTATTGTTTTTGATGATATATCCAGAAGAGGGCAGCTCAAGTTACTTTCAGATCTGGC
CCTCCCTGACAAGAATCATCCAAACTATGGAAGAGTAATAGTAACATCAAGAAACAGGGAAGTA
ATTGAATCCTGTGATCATACCATTACGATAACACAGTTGACTTCCCCAGATGATTGGAATCTCT
TCTGCTACAAAGCTTTTGGATCTTCGAGCTTTTCCCCTGGTGAGGAGATCTGCCAACACCGTGA
ACGAATCTCCAATCTATGTGCTGGCTTACCACTTGCAATCGATGTGCTCAGTGCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR1435
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021