Detail information of BGIOSGA034127_circ_igg.1


General Information
CircRNA Name BGIOSGA034127_circ_igg.1
ID in PlantcircBase osi_circ_009543
Alias Chr11:11225602_11226078(MH63RS2), Chr11:11225602_11226078(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 9427392-9427868  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, find_circ, CIRI2, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGAATTTGTTTGCTAAGAATGGAGGCAATTAATCATCTAACGACATATCCAAGCATCTTCAAT
GGTGCAGCCAGGTCCCATGGTTCCGAAATTAAAGAAcctgtttgctccgtttggttcatcttcc
tcgccgccggcgtcgcgagcgggccatcatccatccacaaatcaaaactgtatagagtagttta
cgactgta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTTTGCTCCGTTTGGTTCATCTTCCTCGCCGCCGGCGTCGCGAGCGGGCCATCATCCATCC
ACAAATCAAAACTGTATAGAGTAGTTTACGACTGTAAAGACTGTATAGATAACAGAAAAATCAT
TTAACAGAAAAATCTAAGGTTTAAGATAACAGGGAATAGCACAGTACCAATTCACATGGCAAGT
TGGCAACAATGCTCTAAATCATCATCCACAAATTCAGGTACGTACCGTCACTTTATTATCCTGT
TTGGTGACCATAGGTCAAGCTTCAGCACAGAAAATGAACTCAAATGCTCTTGGACAGAAGTCTT
GTCAAAGTTCAAGGAGACCCAGTTACTGAAGAAGAGCGAGCAAACATCCGGGAATCTGTGAATT
TGTTTGCTAAGAATGGAGGCAATTAATCATCTAACGACATATCCAAGCATCTTCAATGGTGCAG
CCAGGTCCCATGGTTCCGAAATTAAAGAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021