Detail information of BGIOSGA034291_circ_g.1


General Information
CircRNA Name BGIOSGA034291_circ_g.1
ID in PlantcircBase osi_circ_009394
Alias Chr11:6067525_6068815(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 5465127-5466417  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA034291
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA034291-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTGATTTATTATGTCCGCTAGTGTACATGTGAAACCACAATGAGTCAAAGTATGCATAAGCA
CTCCTCTTTTCTTCATCAATGTCCTTCCAAAGATCCctctcggaatgaatgaacacccttgcgg
aagttctcccattcttctggatcatcaaactaattcatagagaaaacatattagcatagctttt
gtaaggtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTCGGAATGAATGAACACCCTTGCGGAAGTTCTCCCATTCTTCTGGATCATCAAACTAATTC
ATAGAGAAAACATATTAGCATAGCTTTTGTAAGGTGCAAAAGGAAAACAGGGTAAGGGTGGAAA
TGTCTGACACACCAGCTGGCTGAAATCTTCTCCCAGTGCTTTGTTCTGAAGAAAACAGTAGATA
AAGTAAAGAACATATATACCACATTCATCCCCATTCTGCTGTGGCACCTGAAAAGTTATTTAAG
TAACATGATAAGAAATTCAGATAAGATGAACATGATGCAGAAACTGAAACGGTGCACTTTGAGA
TGTTAAACACCATACCTCAGGAAACTCAAGACAGATTTTGTTAATGAATTGCTCATTCTCTTCC
CGCTCTTCAGTTTTAAAAATATCAGCAATAAATCTGGTACTCCAGCAAAAAAAAGGAAGAATCA
AATTTAACTAAGAGACTCTAAGTACACAAGTTTGTCGCTTATATTCTATCAGAAGTTGAGTTGT
ATAATTAAATAGTCCCTGTGAAAACAAACTACTAAGGCCTCAGTAGGCACAAGCAAGAGGCAGA
AGTTTGAGGTGGCTATGTTGAGCAGCATAAACTGATTGTGGGCCTGTGACAACAAGCACCCTAA
TTACCGAAACATTGTCCAAGTGTCCAAAACCTATATTGGGTCTAACGTTGGATATATCGAAGAT
GAAAAAACATCCATTATGGTTAAAGAGAAACAGGTATCTAGTAAGTCCACCTGCTGGGCTGTTC
CAAGTTCCAAAAATATATTGTTGCATTCCCATACAGAACAAAAGAACAGTTTGTTTTTAATATT
TCAAATTGCTGGTAGCAATATAGATCTATATGTATTATCAAGAGACCCATATTGAAGGGGGAAA
GGACCAGACCTTTTGATATTCGATCGCAACCTTGTCGGATTTGTTGTTTTAAGTGAATCCAGCA
GCAGCATGCGTGGTCCTTTGTCAGTACCCAGGTAGTCTGTCTCACCAAAGTTGCATAAGACAAG
GAGGTTCCAGTGTCCCCTGCAGTTAAGAAAGTGGATAATTGAATATATTTGATAATGAAATTAA
TAAACCATAGGGTTACTGGTAGTGAAGCAACTTACCATATAACAATAGGAACGAAAACATATTG
TCTTGAAAATACTTTCTTAGCCTTAATCCATTTAAGGACATTTGATTTATTATGTCCGCTAGTG
TACATGTGAAACCACAATGAGTCAAAGTATGCATAAGCACTCCTCTTTTCTTCATCAATGTCCT
TCCAAAGATCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021