Detail information of AT1G59560_circ_g.1


General Information
CircRNA Name AT1G59560_circ_g.1
ID in PlantcircBase ath_circ_007999
Alias 1:21882411-21882551
Organism Arabidpsis thaliana
Position chr1: 21882411-21882551  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G59560
Parent gene annotation E3 ubiquitin-protein ligase SPL1
Parent gene strand +
Alternative splicing NA
Support reads 1/1
Tissues root;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G59560.2:1
AT1G59560.1:1
AT1G59560.3:1
AT1G59560.4:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATGTATTTGAAAAGGCAGAGCCGGTATCGCTTGTTCAAGGAGCGTTGGGTTATCTTAAAGGC
TTTAAGgacgacgggacaggtcgtgtgaatgtagatgtatctcaaggtgaattaggcttggcgt
tgacggttggtag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 141
Transcript exons: 21882411-21882551
GACGACGGGACAGGTCGTGTGAATGTAGATGTATCTCAAGGTGAATTAGGCTTGGCGTTGACGG
TTGGTAGTGATGTATTTGAAAAGGCAGAGCCGGTATCGCTTGTTCAAGGAGCGTTGGGTTATCT
TAAAGGCTTTAAG

Genomic sequence GACGACGGGACAGGTCGTGTGAATGTAGATGTATCTCAAGGTGAATTAGGCTTGGCGTTGACGG
TTGGTAGTGATGTATTTGAAAAGGCAGAGCCGGTATCGCTTGTTCAAGGAGCGTTGGGTTATCT
TAAAGGCTTTAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.176995389
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020