Detail information of AT2G01690_circ_g.2


General Information
CircRNA Name AT2G01690_circ_g.2
ID in PlantcircBase ath_circ_012484
Alias 2:310424-310563
Organism Arabidpsis thaliana
Position chr2: 310424-310563  JBrowse»
Reference genome TAIR10.38
Type   i-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G01690
Parent gene annotation ARM repeat superfamily protein
Parent gene strand -
Alternative splicing AT2G01690_circ_g.1
Support reads 2
Tissues seedling
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACCAATCAACCCACTGTAGTGACCTTAGAACATTCCTTAATTGAAGAAATGTAGGAAATGAGA
TAATACatcaaagtgggaaaactataatcgaaaaagccagccaactctcaaggggccatataaa
acatgcagaaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 140
Transcript exons: 310424-310563
ATCAAAGTGGGAAAACTATAATCGAAAAAGCCAGCCAACTCTCAAGGGGCCATATAAAACATGC
AGAAAAAACCAATCAACCCACTGTAGTGACCTTAGAACATTCCTTAATTGAAGAAATGTAGGAA
ATGAGATAATAC

Genomic sequence ATCAAAGTGGGAAAACTATAATCGAAAAAGCCAGCCAACTCTCAAGGGGCCATATAAAACATGC
AGAAAAAACCAATCAACCCACTGTAGTGACCTTAGAACATTCCTTAATTGAAGAAATGTAGGAA
ATGAGATAATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.331172363
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020