Detail information of AT2G03240_circ_g.6


General Information
CircRNA Name AT2G03240_circ_g.6
ID in PlantcircBase ath_circ_012667
Alias At_ciR2395
Organism Arabidpsis thaliana
Position chr2: 975953-976316  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ, CIRI-full
Parent gene AT2G03240
Parent gene annotation Phosphate transporter PHO1 homolog 5
Parent gene strand -
Alternative splicing NA
Support reads 3
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G03240.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCTCTGCATCATCATCATCTTCTTCGTCAGAGGATTTACCAGCTTTGCTTGATCCTCCTTCTT
GTATCGCTTCCATGTGAGCTTGAGCTCCAACTTTCActgtagcttttgagtaaccgaagcttct
ggtaaaactcaacgaaggcgcgtctgagtttcgcctccactttcctcagattctctctgctaaa
tttaagct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 364
Transcript exons: 975953-976316
CTGTAGCTTTTGAGTAACCGAAGCTTCTGGTAAAACTCAACGAAGGCGCGTCTGAGTTTCGCCT
CCACTTTCCTCAGATTCTCTCTGCTAAATTTAAGCTCCGTCAAATTCGAGGCCTGGAGAACACT
TTTAATGGTGGATCGTGGCGTTTCCTTCGTATGGTTAAACTTGACACGATCCAAAACCTCAATC
GGAGGTGGTCTCCCAGCTTTCATCTTCCTCACGTCACCGGACACTTCGCCGGAAACACCGTTAT
CTTCTTCTTTCTCTGCATCATCATCATCTTCTTCGTCAGAGGATTTACCAGCTTTGCTTGATCC
TCCTTCTTGTATCGCTTCCATGTGAGCTTGAGCTCCAACTTTCA

Genomic sequence CTGTAGCTTTTGAGTAACCGAAGCTTCTGGTAAAACTCAACGAAGGCGCGTCTGAGTTTCGCCT
CCACTTTCCTCAGATTCTCTCTGCTAAATTTAAGCTCCGTCAAATTCGAGGCCTGGAGAACACT
TTTAATGGTGGATCGTGGCGTTTCCTTCGTATGGTTAAACTTGACACGATCCAAAACCTCAATC
GGAGGTGGTCTCCCAGCTTTCATCTTCCTCACGTCACCGGACACTTCGCCGGAAACACCGTTAT
CTTCTTCTTTCTCTGCATCATCATCATCTTCTTCGTCAGAGGATTTACCAGCTTTGCTTGATCC
TCCTTCTTGTATCGCTTCCATGTGAGCTTGAGCTCCAACTTTCA
Conservation Information
Conserved circRNAs NA
PMCS 0.318340796
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015