Plant Circular RNA Database

Detail information of Os05g0143500_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os05g0143500_circ_g.1
					
						ID in PlantcircBase
						osa_circ_026524
					
						Alias
						Os05circ02506/Os_ciR10027
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 2512798-2514806  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplorer, SMALT, Segemehl, find_circ
					
						Parent gene
						
							Os05g0143500						
					
						Parent gene annotation
						
							Similar to Mitogen-activated protein kinase 14. (Os05t0143500-01
);Similar to Mitogen-activated protein kinase 14. (Os05t0143500-
02);Similar to Kinase (Fragment). (Os05t0143500-03)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os05g0143500_circ_g.2 Os05g0143500_circ_g.3 Os05g0143500_circ_g.4 						
					
						Support reads
						5/2/2
					
						Tissues
						leaf/root/shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0143500-01:3
Os05t0143500-02:3

General Information
CircRNA Name	Os05g0143500_circ_g.1
ID in PlantcircBase	osa_circ_026524
Alias	Os05circ02506/Os_ciR10027
Organism	Oryza sativa
Position	chr5: 2512798-2514806 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRCexplorer, SMALT, Segemehl, find_circ
Parent gene	Os05g0143500
Parent gene annotation	Similar to Mitogen-activated protein kinase 14. (Os05t0143500-01 );Similar to Mitogen-activated protein kinase 14. (Os05t0143500- 02);Similar to Kinase (Fragment). (Os05t0143500-03)
Parent gene strand	+
Alternative splicing	Os05g0143500_circ_g.2 Os05g0143500_circ_g.3 Os05g0143500_circ_g.4
Support reads	5/2/2
Tissues	leaf/root/shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0143500-01:3 Os05t0143500-02:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAGATTTATATCATCAGCTAATTGATTTTTCTGTTTTTAGGATTATATTGCAACAAGGTGGTAC
CGAGCACCAGAGCTGTGTGGATCTTTTTTCTCCAAGacaccttctgagatggattttttcaccg
agtacggtgagggaaacaggtacaagatagaagaggttataggaaaagggagttatggtgtggt
ttgctctg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 180
Transcript exons: 2512798-2512956,2514786-2514806
ACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTACAAGATAGAAGAGG
TTATAGGAAAAGGGAGTTATGGTGTGGTTTGCTCTGCTTTGGACACTCACACCGGTGATAAAGT
TGCTATCAAGAAAATCAATGACATCTTTGAGTGTGGATCTTTTTTCTCCAAG
Transcript length: 597
Transcript exons: 2512798-2513206,2514533-2514660,2514747-2514806
ACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTACAAGATAGAAGAGG
TTATAGGAAAAGGGAGTTATGGTGTGGTTTGCTCTGCTTTGGACACTCACACCGGTGATAAAGT
TGCTATCAAGAAAATCAATGACATCTTTGAGCATGTGTCCGATGCAACACGGATACTTCGCGAG
ATCAAGTTGCTTAGACTCCTGCGACATCCGGATATCGTGGAAATTAAGCATATTCTACTTCCTC
CATCAAGGAGAGAATTCAAGGATATCTACGTTGTTTTTGAACTCATGGAGTCTGATTTGCACCA
AGTTATAAAGGCCAACGATGACTTGACTCCTGAACACTACCAGTTTTTCTTGTATCAGTTGCTC
CGAGGACTGAAATATATACACACAGCAAATGTATTTCATCGAGATCTCAAACCAAAAAATATCT
TGGCGAATGCTGATTGTAAGCTCAAAATATGTGATTTCGGCCTTGCAAGGGTAGCTTTTAGTGA
TACTCCAACCGCCATCTTCTGGACGGATTATATTGCAACAAGGTGGTACCGAGCACCAGAGCTG
TGTGGATCTTTTTTCTCCAAG
Transcript length: 607
Transcript exons: 2512798-2513206,2514523-2514660,2514747-2514806
ACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTACAAGATAGAAGAGG
TTATAGGAAAAGGGAGTTATGGTGTGGTTTGCTCTGCTTTGGACACTCACACCGGTGATAAAGT
TGCTATCAAGAAAATCAATGACATCTTTGAGCATGTGTCCGATGCAACACGGATACTTCGCGAG
ATCAAGTTGCTTAGACTCCTGCGACATCCGGATATCGTGGAAATTAAGCATATTCTACTTCCTC
CATCAAGGAGAGAATTCAAGGATATCTACGTTGTTTTTGAACTCATGGAGTCTGATTTGCACCA
AGTTATAAAGGCCAACGATGACTTGACTCCTGAACACTACCAGTTTTTCTTGTATCAGTTGCTC
CGAGGACTGAAATATATACACACAGCTTTTTGCAGCAAATGTATTTCATCGAGATCTCAAACCA
AAAAATATCTTGGCGAATGCTGATTGTAAGCTCAAAATATGTGATTTCGGCCTTGCAAGGGTAG
CTTTTAGTGATACTCCAACCGCCATCTTCTGGACGGATTATATTGCAACAAGGTGGTACCGAGC
ACCAGAGCTGTGTGGATCTTTTTTCTCCAAG
						
					

						Genomic sequence
						
							ACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTACAAGATAGAAGAGG
TTATAGGAAAAGGGAGTTATGGTGTGGTTTGCTCTGCTTTGGACACTCACACCGGTGATAAAGT
TGCTATCAAGAAAATCAATGACATCTTTGAGCATGTGTCCGATGCAACACGGATACTTCGCGAG
ATCAAGTTGCTTAGACTCCTGCGACATCCGGATATCGTGGAAATTAAGCATATTCTACTTCCTC
CATCAAGGAGAGAATTCAAGGATATCTACGTTGTTTTTGAACTCATGGAGTCTGATTTGCACCA
AGTTATAAAGGCCAACGATGACTTGACTCCTGAACACTACCAGTTTTTCTTGTATCAGTTGCTC
CGAGGACTGAAATATATACACACAGGTAATTGATTTATTTTCACATGAAAGATGGTTCTTTTGC
ATTTCTTTCAGTAGCCTGCTGTGAAGAATGTTCTATTTAAATAAATAAATTTGCTAAGGACAAT
TGCCACCATGTTATAACTGTTGCCAGATAACAACCAAACTATTTTTCTACTAGCAGATTATTCT
GGGATTGTTCCTTCAGCATTTGTGCTTTTTTGGGAACCTACAGTTTATCTGCACAAACTATATA
ATGAAAACAATCTTATGGAACTGTGGTTGCTTTAGTACAAATAAACCAGCAGTACCCCAAAATT
CTCCTGAAATGTGGATCATTCTTGTGGGATGACTAGATGCCCCCTGGCGCCCTTTGATGTAGAG
TTTATAAAATCTGAAGTGTTAGCAAGCTTCCATAGCGGGCATCAACAGAATCTTGTTGTCTTCC
TTTGCTTCCCAAGTTGTGGATACACTGAATTTGTGCCAGGATGGTACAGCCTGAGGCATTGGGT
AGTTTAACCATCCAAAAAATTATTCATGGCATCCTGAAAGTATAATGCATGTAACTGCAACCTC
ATCTTCTATCTGTACATGCTATTGACCATGGTTCTTACCTTCTGGCAATACAATATAACAAATA
CTTTTCCTAGGGAAGAGGCTATGCTTGCTGCCCTTTGTGAAAAGTCGAACAACTAGCTAACATC
TTCCAATTGAACTGGATTTGTTATCTGATACACATCTGCCATGGTGCAAACCGAGGTTTGGGCT
GTAATAAACAAGGAATTTCATATTCTCTGGTTTCTTCATCTTCTTACCCTGGTTGTTTGTTGGC
TTTGGTCAGACAACTTAGTTTGTTTTCAAAAGCAGAAGAACAAAGGCAAGCACAAGTGTTTACA
TATATTTGACACATTCCAGCATTCGTTGTTCCTGATAGACATACCCTTCACATGAAGCACCCTT
TTGTGACTAAGTTAGTTCTGTTCTTTAGGTTTTTTTATTAACCTGATTGTGATTGAATAGGATT
TCCCTATTCATTTTATACCATGATAGAAACATCTATCTTGCTTTGCTTCTAATGATGCTGTAAA
TAATGCATGTGCTCATCCCCCATCCCCTCTTTTTTTCTAAATTATTCTAAGAAGTCAGTTTGAC
CAATTTAGTACTTTTGTTATATGAAAGGCTGAAAAATACAAACGCACCATTCAGGAAAGGAATA
ATAAGACGAGGACTACTAACAGATTAATCTTTTTTCTGTACTCAGTGTTCTATGTTTGTGTGAT
TCCTATTTATCAGTCCATCCTATTTGTGACTCTAATTCCTGACTGATGCATCTTTTGATAGCTT
TTTGCAGCAAATGTATTTCATCGAGATCTCAAACCAAAAAATATCTTGGCGAATGCTGATTGTA
AGCTCAAAATATGTGATTTCGGCCTTGCAAGGGTAGCTTTTAGTGATACTCCAACCGCCATCTT
CTGGACGGTACGTCATTTCACGCCCACTACACACTATGCAGCTCATTACTCTTAAGATTTATAT
CATCAGCTAATTGATTTTTCTGTTTTTAGGATTATATTGCAACAAGGTGGTACCGAGCACCAGA
GCTGTGTGGATCTTTTTTCTCCAAG
						
					

			
		

Sequences
Splice junction sequence	AAGATTTATATCATCAGCTAATTGATTTTTCTGTTTTTAGGATTATATTGCAACAAGGTGGTAC CGAGCACCAGAGCTGTGTGGATCTTTTTTCTCCAAGacaccttctgagatggattttttcaccg agtacggtgagggaaacaggtacaagatagaagaggttataggaaaagggagttatggtgtggt ttgctctg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 180 Transcript exons: 2512798-2512956,2514786-2514806 ACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTACAAGATAGAAGAGG TTATAGGAAAAGGGAGTTATGGTGTGGTTTGCTCTGCTTTGGACACTCACACCGGTGATAAAGT TGCTATCAAGAAAATCAATGACATCTTTGAGTGTGGATCTTTTTTCTCCAAG Transcript length: 597 Transcript exons: 2512798-2513206,2514533-2514660,2514747-2514806 ACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTACAAGATAGAAGAGG TTATAGGAAAAGGGAGTTATGGTGTGGTTTGCTCTGCTTTGGACACTCACACCGGTGATAAAGT TGCTATCAAGAAAATCAATGACATCTTTGAGCATGTGTCCGATGCAACACGGATACTTCGCGAG ATCAAGTTGCTTAGACTCCTGCGACATCCGGATATCGTGGAAATTAAGCATATTCTACTTCCTC CATCAAGGAGAGAATTCAAGGATATCTACGTTGTTTTTGAACTCATGGAGTCTGATTTGCACCA AGTTATAAAGGCCAACGATGACTTGACTCCTGAACACTACCAGTTTTTCTTGTATCAGTTGCTC CGAGGACTGAAATATATACACACAGCAAATGTATTTCATCGAGATCTCAAACCAAAAAATATCT TGGCGAATGCTGATTGTAAGCTCAAAATATGTGATTTCGGCCTTGCAAGGGTAGCTTTTAGTGA TACTCCAACCGCCATCTTCTGGACGGATTATATTGCAACAAGGTGGTACCGAGCACCAGAGCTG TGTGGATCTTTTTTCTCCAAG Transcript length: 607 Transcript exons: 2512798-2513206,2514523-2514660,2514747-2514806 ACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTACAAGATAGAAGAGG TTATAGGAAAAGGGAGTTATGGTGTGGTTTGCTCTGCTTTGGACACTCACACCGGTGATAAAGT TGCTATCAAGAAAATCAATGACATCTTTGAGCATGTGTCCGATGCAACACGGATACTTCGCGAG ATCAAGTTGCTTAGACTCCTGCGACATCCGGATATCGTGGAAATTAAGCATATTCTACTTCCTC CATCAAGGAGAGAATTCAAGGATATCTACGTTGTTTTTGAACTCATGGAGTCTGATTTGCACCA AGTTATAAAGGCCAACGATGACTTGACTCCTGAACACTACCAGTTTTTCTTGTATCAGTTGCTC CGAGGACTGAAATATATACACACAGCTTTTTGCAGCAAATGTATTTCATCGAGATCTCAAACCA AAAAATATCTTGGCGAATGCTGATTGTAAGCTCAAAATATGTGATTTCGGCCTTGCAAGGGTAG CTTTTAGTGATACTCCAACCGCCATCTTCTGGACGGATTATATTGCAACAAGGTGGTACCGAGC ACCAGAGCTGTGTGGATCTTTTTTCTCCAAG
Genomic sequence	ACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTACAAGATAGAAGAGG TTATAGGAAAAGGGAGTTATGGTGTGGTTTGCTCTGCTTTGGACACTCACACCGGTGATAAAGT TGCTATCAAGAAAATCAATGACATCTTTGAGCATGTGTCCGATGCAACACGGATACTTCGCGAG ATCAAGTTGCTTAGACTCCTGCGACATCCGGATATCGTGGAAATTAAGCATATTCTACTTCCTC CATCAAGGAGAGAATTCAAGGATATCTACGTTGTTTTTGAACTCATGGAGTCTGATTTGCACCA AGTTATAAAGGCCAACGATGACTTGACTCCTGAACACTACCAGTTTTTCTTGTATCAGTTGCTC CGAGGACTGAAATATATACACACAGGTAATTGATTTATTTTCACATGAAAGATGGTTCTTTTGC ATTTCTTTCAGTAGCCTGCTGTGAAGAATGTTCTATTTAAATAAATAAATTTGCTAAGGACAAT TGCCACCATGTTATAACTGTTGCCAGATAACAACCAAACTATTTTTCTACTAGCAGATTATTCT GGGATTGTTCCTTCAGCATTTGTGCTTTTTTGGGAACCTACAGTTTATCTGCACAAACTATATA ATGAAAACAATCTTATGGAACTGTGGTTGCTTTAGTACAAATAAACCAGCAGTACCCCAAAATT CTCCTGAAATGTGGATCATTCTTGTGGGATGACTAGATGCCCCCTGGCGCCCTTTGATGTAGAG TTTATAAAATCTGAAGTGTTAGCAAGCTTCCATAGCGGGCATCAACAGAATCTTGTTGTCTTCC TTTGCTTCCCAAGTTGTGGATACACTGAATTTGTGCCAGGATGGTACAGCCTGAGGCATTGGGT AGTTTAACCATCCAAAAAATTATTCATGGCATCCTGAAAGTATAATGCATGTAACTGCAACCTC ATCTTCTATCTGTACATGCTATTGACCATGGTTCTTACCTTCTGGCAATACAATATAACAAATA CTTTTCCTAGGGAAGAGGCTATGCTTGCTGCCCTTTGTGAAAAGTCGAACAACTAGCTAACATC TTCCAATTGAACTGGATTTGTTATCTGATACACATCTGCCATGGTGCAAACCGAGGTTTGGGCT GTAATAAACAAGGAATTTCATATTCTCTGGTTTCTTCATCTTCTTACCCTGGTTGTTTGTTGGC TTTGGTCAGACAACTTAGTTTGTTTTCAAAAGCAGAAGAACAAAGGCAAGCACAAGTGTTTACA TATATTTGACACATTCCAGCATTCGTTGTTCCTGATAGACATACCCTTCACATGAAGCACCCTT TTGTGACTAAGTTAGTTCTGTTCTTTAGGTTTTTTTATTAACCTGATTGTGATTGAATAGGATT TCCCTATTCATTTTATACCATGATAGAAACATCTATCTTGCTTTGCTTCTAATGATGCTGTAAA TAATGCATGTGCTCATCCCCCATCCCCTCTTTTTTTCTAAATTATTCTAAGAAGTCAGTTTGAC CAATTTAGTACTTTTGTTATATGAAAGGCTGAAAAATACAAACGCACCATTCAGGAAAGGAATA ATAAGACGAGGACTACTAACAGATTAATCTTTTTTCTGTACTCAGTGTTCTATGTTTGTGTGAT TCCTATTTATCAGTCCATCCTATTTGTGACTCTAATTCCTGACTGATGCATCTTTTGATAGCTT TTTGCAGCAAATGTATTTCATCGAGATCTCAAACCAAAAAATATCTTGGCGAATGCTGATTGTA AGCTCAAAATATGTGATTTCGGCCTTGCAAGGGTAGCTTTTAGTGATACTCCAACCGCCATCTT CTGGACGGTACGTCATTTCACGCCCACTACACACTATGCAGCTCATTACTCTTAAGATTTATAT CATCAGCTAATTGATTTTTCTGTTTTTAGGATTATATTGCAACAAGGTGGTACCGAGCACCAGA GCTGTGTGGATCTTTTTTCTCCAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_005954* osi_circ_015675 						
					
						PMCS
						0.42737398

Conservation Information
Conserved circRNAs	osi_circ_005954* osi_circ_015675
PMCS	0.42737398

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							2513042-2513122(-)
						
						Potential amino acid sequence
						
							MLNFHDIRMSQESKQLDLAKYPCCIGHMLKDVIDFLDSNFITGVSVQSRANHTITPFSYNLFYL
VPVSLTVLGEKIHLRRCLGEKRSTQLWCSVPPCCNIIRPEDGGWSITKSYPCKAEITYFELTIS
IRQDIFWFEISMKYICCKKLCVYISVLGATDTRKTGSVQESSHRWPL*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	2513042-2513122(-)
Potential amino acid sequence	MLNFHDIRMSQESKQLDLAKYPCCIGHMLKDVIDFLDSNFITGVSVQSRANHTITPFSYNLFYL VPVSLTVLGEKIHLRRCLGEKRSTQLWCSVPPCCNIIRPEDGGWSITKSYPCKAEITYFELTIS IRQDIFWFEISMKYICCKKLCVYISVLGATDTRKTGSVQESSHRWPL*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os05g0143500_circ_g.1

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