Detail information of Zm00001d046234_circ_g.2


General Information
CircRNA Name Zm00001d046234_circ_g.2
ID in PlantcircBase zma_circ_005878
Alias seedling_test_circ_001294
Organism Zea mays
Position chr9: 73801029-73801761  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method find_circ
Parent gene Zm00001d046234
Parent gene annotation Inositol oxygenase 2
Parent gene strand -
Alternative splicing Zm00001d046234_circ_g.1 Zm00001d046234_circ_g.3
Support reads NA
Tissues seedling
Exon boundary   Yes-No
Splicing signals   TG-AC
Number of exons covered Zm00001d046234_T002:4
Zm00001d046234_T001:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATGACATGAGCACCTTGTTGAGGCCGCAGCCCTCCGAGTAGACCCCCAACTTGGTGTTGAGC
TTCGGGTTGTGGTAGTCGGGGTTCTCCTTGAAGTACcttgtcgattagggacatgtagtagggc
ttcacctcctccacgtcgatcctgctgttgctcttgctgtacaggtcatacttgctgcaacaag
aggggaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGTCGATTAGGGACATGTAGTAGGGCTTCACCTCCTCCACGTCGATCCTGCTGTTGCTCTTG
CTGTACAGGTCATACTTGCTGCAACAAGAGGGGAAAAGAGACAGCCAACGAACGCCAGTTGTTA
ATTATATATACTCATCTATAAAGTGTCCACGTCTCGTCCATATATATCAAGTATGCGCAACCAA
TTGATCTGGTGCTGTCTTGTCTTACTTGAACACATGCAGCCACTTGAGGTTCTCCTTGTCCTCA
TCGTCCATCAGGTGTGTGTAGGCTCCATGCTTGTGCAGGGCTGCGTGCATATATGTATATATAA
ATGCATGCATCCTGATTTAACCTTCTTTTTTTCGCTCCGTACAGTTACAAAAAGGGAGGGATCA
GCGAGCGAGAGGGGCAGGGGGGAGGGCGCTTACGGTAGAACGAGTGGTATCTGATGATGAACAG
CCCCGCGGAAGGAAGGGTGCACTTGTTCTCCTTGGCCACCTGACGAGATGAGATGAGATGAGCA
CACGCACATGCATGCATGCCATGCCAGGCAGCGTTTTTCTTTTCTTTTCTTTTCTTCTCCCTTC
ACGCGGCACACACTACGCAATGTGGATACTGACCAGGTACATGTAGTCGTCGTGGCCCCATGAC
ATGAGCACCTTGTTGAGGCCGCAGCCCTCCGAGTAGACCCCCAACTTGGTGTTGAGCTTCGGGT
TGTGGTAGTCGGGGTTCTCCTTGAAGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.187656173
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018