Plant Circular RNA Database

Detail information of orai.007G222200_circ_g.1

			
						 General Information
					
						CircRNA Name
						orai.007G222200_circ_g.1
					
						ID in PlantcircBase
						gra_circ_000751
					
						Alias
						Chr07:26176104|26178646
					
						Organism
						
							Gossypium raimondii						
					
						Position
						
							chrChr07: 26176104-26178646  JBrowse»						
					
						Reference genome
						
							Graimondii_221						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							Gorai.007G222200						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						2
					
						Tissues
						ovule
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Gorai.007G222200.1:6

General Information
CircRNA Name	orai.007G222200_circ_g.1
ID in PlantcircBase	gra_circ_000751
Alias	Chr07:26176104\|26178646
Organism	Gossypium raimondii
Position	chrChr07: 26176104-26178646 JBrowse»
Reference genome	Graimondii_221
Type	e-circRNA
Identification method	CIRI
Parent gene	Gorai.007G222200
Parent gene annotation	NA
Parent gene strand	+
Alternative splicing	NA
Support reads	2
Tissues	ovule
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Gorai.007G222200.1:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTTCCTCTTTAAGTTCTGTTTTTCTTGCTAGGCCATTGACTTCCTCGATAAGTTGCTTCGATAT
GATCATCAGGAAAGGCCAACCGCAAAAGAAGCAATGgcattggactattgccactcacaaggga
ttatgcaccgagatgtgaagccccataatgtgatgattgatcatgagcagaggaaacttcgtct
tattgatt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 531
Transcript exons: 26176104-26176261,26177452-26177542,26177977-26178042,26
178268-26178350,26178435-26178498,26178578-26178646
GCATTGGACTATTGCCACTCACAAGGGATTATGCACCGAGATGTGAAGCCCCATAATGTGATGA
TTGATCATGAGCAGAGGAAACTTCGTCTTATTGATTGGGGCCTTGCAGAGTTTTATCATCCAGG
GACAGAATACAATGTTCGTGTTGCTTCCAGATATTTTAAAGGTCCTGAGCTTCTTGTCGATTTG
CAAGACTATGATTACTCTTTAGACTTGTGGAGCCTTGGTTGTATGTTTGCTGGAATGATATTTC
GGAAGGAGCCATTCTTTTATGGGCATGATAATTATGATCAACTGGCCAAGATAGCCAAGGTTCT
TGGGACAGATGAATTAAATGCTTATCTGAATAAGTACCGCATAGAATTGGATCCACACCTTGCG
GCCCTTGTTGGCAGGCACAGTCGAAAACCTTGGACAAAGTTCATTAATGCCGAGAATCAACATT
TGGCACTACCTGAGGCCATTGACTTCCTCGATAAGTTGCTTCGATATGATCATCAGGAAAGGCC
AACCGCAAAAGAAGCAATG
						
					

						Genomic sequence
						
							GCATTGGACTATTGCCACTCACAAGGGATTATGCACCGAGATGTGAAGCCCCATAATGTGATGA
TTGATCATGAGCAGAGGAAACTTCGTCTTATTGATTGGGGCCTTGCAGAGTTTTATCATCCAGG
GACAGAATACAATGTTCGTGTTGCTTCCAGGTTTGTCTCCTTTTTGGCATCTGTCTTTTAAGTT
CTCAATTTTTCGAGTGGCCTATGTATATGTATGTTAACAGTCTGCATTATTCCACCTATTTTTG
ATTAAAACTACTCATCTGTCTTAAATATAGCTTTATCAAAAGTGCCTAATATTTGAATTGGATA
GCTGACACAGGAGATGGCAATGGAAGTTGATTGATGTGTTTTAGGGGGAAAAGAGCAAAAAATC
CATAGAACTAGGCTGAACAAATGAGTAAGAAAGATGGAACTCTACTCTCTATTACTTCAAGAAA
ATAATAAGAAAGTTGTGGCTGAATAATTTACAGCTTATTTTTATTAGGGTTACAAATAAACTCT
TAATCCTAGCCCTAGATTTAAACCTAAAGATATCTCATAATCCTAGTCCTAGATTTAAATCCTA
AAGGTAACTAATAATCCTAGCTATCTATCTATATGTCTAATAATAAACAAGACAAATAATAAAA
TAACATCATAATAAAAAAGGTTGCATGTCATTGATTTACCTAAATTATGGTTACTGGTGCTACC
ATAAATTATTCATTGAAAATTGTGCTTCCTACATTGGTTGACTTTTTGAGGATAAATGCTCTTT
CACTTGTGAATTTATAATGTTCAAATTCATTAAGTACAGCCATGAGACCTAAGGCCACAATCCT
CGTTACATGTCTTAGTGGTGTTCTAGTAGCCTGTACTTGAAACATTAAAAATTAGAGTTGAATA
GCTGATGGCATGGAGCTAGAGGCAATCACCAAGACATGCATTCCTCAGTGCAGTTGAGGATTAA
ACATGATATGCCACTGAACATTTTAAAAATCAATAAGATTATTAGGAGCTGAAGACTTTGTATG
TATGAGAAACAAAAAGGATAAAGGGTGGGAAGAGCTGGGGGTAGAGTTTTGTTGTATAGGAATT
CTTCTTAAGAGATAAGGTTGCTTTGTATTTTATGTAACTTCTTGTTACTTATTTTAGTGCTGAA
AATATGTTAGTTTTAGGGTGTTATTACATATTAAAAGAGGATCTTTTCAGTGGATGTCACATTT
CTTGTTACTATTTTTTTTTGCAAATCTATCAGCTTGTGCTTTTTCACAATCAAGCTTATCTTGG
TATTTGAAATTTATCCTTAATTGATGTGTTACCTTTTCTCTCCTTTATACTTCATTTATGGTTT
GCAGATATTTTAAAGGTCCTGAGCTTCTTGTCGATTTGCAAGACTATGATTACTCTTTAGACTT
GTGGAGCCTTGGTTGTATGTTTGCTGGAATGGTGAGTACTTCCTTTAGAATTTTATCCTTTTAG
GCTTAGACCACTTCTCCAGAGGTAGGTTTAACAATCCTTGCCCTGGTTATTTATACATCTAATT
CTCCTCACGCACATTTGTGGTTTTATGCAAGTAGACCTGGACTTATCTTCTGGAAGGCCTGATT
ATCTTGATTTCATGGCTGAAAAGCCACCCTCAATATATGGTTATTGACAATCAGGCAAATGGAA
TCTATTCTCCCAGGACCGTTTAAATATGTTTAAATATCACTGTCCATTTTTATGGGATAGAATA
TCTCCATAGATGAGTGTATCTTGATCTGCTTGCATATATATCCCTGGGTGGCAGATAACAGAGG
AGGATCGAAAGTTGATATATTACCAAGGTTTTAAATTCTCGCTTTCTTGAGATGCTTATTTTTG
AGGGTTGTGCTATACAGATATTTCGGAAGGAGCCATTCTTTTATGGGCATGATAATTATGATCA
ACTGGCCAAGATAGCCAAGGTATGTGAACTCGTGGATGCTTTAAGTAACAATGAGCAGCATAAC
TGTATAGATCCTTGTCTTGTTCAGATATTCTCTTCCTATTCATGTTTGGTGTTGGTTTTTTTAA
GAAAAACCATATTTCTATAAAGCATCACTGACATCTTGGGCGAGAGTCCTTTTATTTAGTTGGG
AAATAAACTTAAATCTTTACAGTTCTTGAGTAGTTTCCATTTCATGCCTTAGGTTCTTGGGACA
GATGAATTAAATGCTTATCTGAATAAGTACCGCATAGAATTGGATCCACACCTTGCGGCCCTTG
TTGGCAGGTTGGTATATAATCTTTTAATCAAATTGATGATGCAGAAGTGCTGTTATTTCCAATT
GAGGAGTATATTCTTTTCTTGATACAGGCACAGTCGAAAACCTTGGACAAAGTTCATTAATGCC
GAGAATCAACATTTGGCACTACCTGAGGTAGTATATCTAGCAAGTTATACAAATCAGAATGTTC
TGTGTATTGTATTTCCTCTTTAAGTTCTGTTTTTCTTGCTAGGCCATTGACTTCCTCGATAAGT
TGCTTCGATATGATCATCAGGAAAGGCCAACCGCAAAAGAAGCAATG
						
					

			
		

Sequences
Splice junction sequence	TTTCCTCTTTAAGTTCTGTTTTTCTTGCTAGGCCATTGACTTCCTCGATAAGTTGCTTCGATAT GATCATCAGGAAAGGCCAACCGCAAAAGAAGCAATGgcattggactattgccactcacaaggga ttatgcaccgagatgtgaagccccataatgtgatgattgatcatgagcagaggaaacttcgtct tattgatt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 531 Transcript exons: 26176104-26176261,26177452-26177542,26177977-26178042,26 178268-26178350,26178435-26178498,26178578-26178646 GCATTGGACTATTGCCACTCACAAGGGATTATGCACCGAGATGTGAAGCCCCATAATGTGATGA TTGATCATGAGCAGAGGAAACTTCGTCTTATTGATTGGGGCCTTGCAGAGTTTTATCATCCAGG GACAGAATACAATGTTCGTGTTGCTTCCAGATATTTTAAAGGTCCTGAGCTTCTTGTCGATTTG CAAGACTATGATTACTCTTTAGACTTGTGGAGCCTTGGTTGTATGTTTGCTGGAATGATATTTC GGAAGGAGCCATTCTTTTATGGGCATGATAATTATGATCAACTGGCCAAGATAGCCAAGGTTCT TGGGACAGATGAATTAAATGCTTATCTGAATAAGTACCGCATAGAATTGGATCCACACCTTGCG GCCCTTGTTGGCAGGCACAGTCGAAAACCTTGGACAAAGTTCATTAATGCCGAGAATCAACATT TGGCACTACCTGAGGCCATTGACTTCCTCGATAAGTTGCTTCGATATGATCATCAGGAAAGGCC AACCGCAAAAGAAGCAATG
Genomic sequence	GCATTGGACTATTGCCACTCACAAGGGATTATGCACCGAGATGTGAAGCCCCATAATGTGATGA TTGATCATGAGCAGAGGAAACTTCGTCTTATTGATTGGGGCCTTGCAGAGTTTTATCATCCAGG GACAGAATACAATGTTCGTGTTGCTTCCAGGTTTGTCTCCTTTTTGGCATCTGTCTTTTAAGTT CTCAATTTTTCGAGTGGCCTATGTATATGTATGTTAACAGTCTGCATTATTCCACCTATTTTTG ATTAAAACTACTCATCTGTCTTAAATATAGCTTTATCAAAAGTGCCTAATATTTGAATTGGATA GCTGACACAGGAGATGGCAATGGAAGTTGATTGATGTGTTTTAGGGGGAAAAGAGCAAAAAATC CATAGAACTAGGCTGAACAAATGAGTAAGAAAGATGGAACTCTACTCTCTATTACTTCAAGAAA ATAATAAGAAAGTTGTGGCTGAATAATTTACAGCTTATTTTTATTAGGGTTACAAATAAACTCT TAATCCTAGCCCTAGATTTAAACCTAAAGATATCTCATAATCCTAGTCCTAGATTTAAATCCTA AAGGTAACTAATAATCCTAGCTATCTATCTATATGTCTAATAATAAACAAGACAAATAATAAAA TAACATCATAATAAAAAAGGTTGCATGTCATTGATTTACCTAAATTATGGTTACTGGTGCTACC ATAAATTATTCATTGAAAATTGTGCTTCCTACATTGGTTGACTTTTTGAGGATAAATGCTCTTT CACTTGTGAATTTATAATGTTCAAATTCATTAAGTACAGCCATGAGACCTAAGGCCACAATCCT CGTTACATGTCTTAGTGGTGTTCTAGTAGCCTGTACTTGAAACATTAAAAATTAGAGTTGAATA GCTGATGGCATGGAGCTAGAGGCAATCACCAAGACATGCATTCCTCAGTGCAGTTGAGGATTAA ACATGATATGCCACTGAACATTTTAAAAATCAATAAGATTATTAGGAGCTGAAGACTTTGTATG TATGAGAAACAAAAAGGATAAAGGGTGGGAAGAGCTGGGGGTAGAGTTTTGTTGTATAGGAATT CTTCTTAAGAGATAAGGTTGCTTTGTATTTTATGTAACTTCTTGTTACTTATTTTAGTGCTGAA AATATGTTAGTTTTAGGGTGTTATTACATATTAAAAGAGGATCTTTTCAGTGGATGTCACATTT CTTGTTACTATTTTTTTTTGCAAATCTATCAGCTTGTGCTTTTTCACAATCAAGCTTATCTTGG TATTTGAAATTTATCCTTAATTGATGTGTTACCTTTTCTCTCCTTTATACTTCATTTATGGTTT GCAGATATTTTAAAGGTCCTGAGCTTCTTGTCGATTTGCAAGACTATGATTACTCTTTAGACTT GTGGAGCCTTGGTTGTATGTTTGCTGGAATGGTGAGTACTTCCTTTAGAATTTTATCCTTTTAG GCTTAGACCACTTCTCCAGAGGTAGGTTTAACAATCCTTGCCCTGGTTATTTATACATCTAATT CTCCTCACGCACATTTGTGGTTTTATGCAAGTAGACCTGGACTTATCTTCTGGAAGGCCTGATT ATCTTGATTTCATGGCTGAAAAGCCACCCTCAATATATGGTTATTGACAATCAGGCAAATGGAA TCTATTCTCCCAGGACCGTTTAAATATGTTTAAATATCACTGTCCATTTTTATGGGATAGAATA TCTCCATAGATGAGTGTATCTTGATCTGCTTGCATATATATCCCTGGGTGGCAGATAACAGAGG AGGATCGAAAGTTGATATATTACCAAGGTTTTAAATTCTCGCTTTCTTGAGATGCTTATTTTTG AGGGTTGTGCTATACAGATATTTCGGAAGGAGCCATTCTTTTATGGGCATGATAATTATGATCA ACTGGCCAAGATAGCCAAGGTATGTGAACTCGTGGATGCTTTAAGTAACAATGAGCAGCATAAC TGTATAGATCCTTGTCTTGTTCAGATATTCTCTTCCTATTCATGTTTGGTGTTGGTTTTTTTAA GAAAAACCATATTTCTATAAAGCATCACTGACATCTTGGGCGAGAGTCCTTTTATTTAGTTGGG AAATAAACTTAAATCTTTACAGTTCTTGAGTAGTTTCCATTTCATGCCTTAGGTTCTTGGGACA GATGAATTAAATGCTTATCTGAATAAGTACCGCATAGAATTGGATCCACACCTTGCGGCCCTTG TTGGCAGGTTGGTATATAATCTTTTAATCAAATTGATGATGCAGAAGTGCTGTTATTTCCAATT GAGGAGTATATTCTTTTCTTGATACAGGCACAGTCGAAAACCTTGGACAAAGTTCATTAATGCC GAGAATCAACATTTGGCACTACCTGAGGTAGTATATCTAGCAAGTTATACAAATCAGAATGTTC TGTGTATTGTATTTCCTCTTTAAGTTCTGTTTTTCTTGCTAGGCCATTGACTTCCTCGATAAGT TGCTTCGATATGATCATCAGGAAAGGCCAACCGCAAAAGAAGCAATG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.459430617

Conservation Information
Conserved circRNAs	NA
PMCS	0.459430617

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							26176134-26178643(+)
26178467-26176146(+)
26176108-26178466(-)
						
						Potential amino acid sequence
						
							MHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGTEYNVRVASRYFKGPELLVDLQDYDYSLDLW
SLGCMFAGMIFRKEPFFYGHDNYDQLAKIAKVLGTDELNAYLNKYRIELDPHLAALVGRHSRKP
WTKFINAENQHLALPEAIDFLDKLLRYDHQERPTAKEAMALDYCHSQGIMHRDVKPHNVMIDHE
QRKLRLIDWGLAEFYHPGTEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEP
FFYGHDNYDQLAKIAKVLGTDELNAYLNKYRIELDPHLAALVGRHSRKPWTKFINAENQHLALP
EAIDFLDKLLRYDHQERPTAKEAMALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFY
HPGTEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLAKIA
KVLGTDELNAYLNKYRIELDPHLAALVGRHSRKPWTKFINAENQHLALPEAIDFLDKLLRYDHQ
ERPTAKEAMALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGTEYNVRVASRYF
KGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLAKIAKVLGTDELNAYLNKY
RIELDPHLAALVGRHSRKPWTKFINAENQHLALPEAIDFLDKLLRYDHQERPTAKEAM(+)
MPRINIWHYLRPLTSSISCFDMIIRKGQPQKKQWHWTIATHKGLCTEM*(+)
MPLLLLRLAFPDDHIEATYRGSQWPQVVPNVDSRH*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	26176134-26178643(+) 26178467-26176146(+) 26176108-26178466(-)
Potential amino acid sequence	MHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGTEYNVRVASRYFKGPELLVDLQDYDYSLDLW SLGCMFAGMIFRKEPFFYGHDNYDQLAKIAKVLGTDELNAYLNKYRIELDPHLAALVGRHSRKP WTKFINAENQHLALPEAIDFLDKLLRYDHQERPTAKEAMALDYCHSQGIMHRDVKPHNVMIDHE QRKLRLIDWGLAEFYHPGTEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEP FFYGHDNYDQLAKIAKVLGTDELNAYLNKYRIELDPHLAALVGRHSRKPWTKFINAENQHLALP EAIDFLDKLLRYDHQERPTAKEAMALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFY HPGTEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLAKIA KVLGTDELNAYLNKYRIELDPHLAALVGRHSRKPWTKFINAENQHLALPEAIDFLDKLLRYDHQ ERPTAKEAMALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGTEYNVRVASRYF KGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLAKIAKVLGTDELNAYLNKY RIELDPHLAALVGRHSRKPWTKFINAENQHLALPEAIDFLDKLLRYDHQERPTAKEAM(+) MPRINIWHYLRPLTSSISCFDMIIRKGQPQKKQWHWTIATHKGLCTEM(+) MPLLLLRLAFPDDHIEATYRGSQWPQVVPNVDSRH(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhao et al., 2017b

circRNA

Detail information of orai.007G222200_circ_g.1

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