Detail information of AT5G11470_circ_g.2


General Information
CircRNA Name AT5G11470_circ_g.2
ID in PlantcircBase ath_circ_037591
Alias NA
Organism Arabidpsis thaliana
Position chr5: 3663407-3666195  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT5G11470
Parent gene annotation bromo-adjacent homology (BAH) domain-containing protein
Parent gene strand -
Alternative splicing AT5G11470_circ_g.1
Support reads 2
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT5G11470.2:8
AT5G11470.1:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAACACGAAGTCCGCTGAGTTGAATTTTTCATCCGAGGGTTGTGGATTTCTTTTGTCTTTTGA
AATGCATAGAACAGAGCATTTTCCACCGATTGCTTCcttagatacactttcagacgcctgctcg
tgtctggcttggtgcaaacaccattccatggccatgtcaaattcaaggttgttaggctgagaag
aatgtgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAGATACACTTTCAGACGCCTGCTCGTGTCTGGCTTGGTGCAAACACCATTCCATGGCCATG
TCAAATTCAAGGTTGTTAGGCTGAGAAGAATGTGATGTAGCCACGGCATCTCTCTGGAAAAACA
TATAAAGACCAAAGAGCAAGAAGATTAGTAACGTAACAATGCATTTTTATTTGTGTGCATTATG
CAAGGGAAAGGGAAATGAAAACAATACCATCTCCCGTCGCGTTTGAGTTTTGTGTAGTTTGATA
TGGCCTGAGAATAATGACGGCTTCCCTGGTGGAGTAATCTTAGCGAAAGAAGCAACAAGGGGCC
TGTTGAGCAAAAAAGGCACAGCAGAGATTTCTGAGATGAAAGTATGCCAAAAAAATGGCACTGT
ACATCTCTGCAATTTATCATAGGAAGCTTAGAGAAAAAAGAAGAATATGTCATTTCAGGTTCAC
CTCCCACTTGATAGCAACAAGCATCCCTCATCTAGTCTTCTAATCACCCTTTCTGCAACTTCTC
TTGTTTTGAAAATGACCAAAGCTTCACCTGTATATCAAACAATATGAGGTGCTCTTCATTCCAT
TTATAGTATGTGAGAATCATAAATTAGAACCCGGTGAGTAAAATGGTAGCTTACCAATATGAGG
AATAGTGACTGATGTACGCTCTATCATCCTCGCTTCGCATTGCTGGTTCAAAGCAGAATAGACT
ATATCCTGAAATACAATTCATAAATTTCTTAGGTTGCATAAAAAGAGAAAAGAAGGGAGGTTTC
CATGAAGTAAATCAGGAAACAACTGCATTACATTAGGTTACATTGAGTAAGCATATACAATATA
CATTTTAAGAGACTCCTAAATGTTGTTGAAAAAAAAAGAGACTCCTAAATAAACTGTAATACCT
CCACTTCATCAGATGTATAAGTAGGATCCAAGTTTTGAAGAAGTACCACAGTCCCTTTTTTTTC
TGCTTCCCTCATACTTTCTTCCCAAGGCTGGACATAATTTAGACAAATTAAAAAGTCAGTCCAT
AATTTCTGATACGACGTACAGAATCTGATAACAATTCAGGCTAGCTAGAAGAGACTACGCCAGC
CAAACAAAAAATAGGTGCGGATAGAGAAAGTAAACAATTTGACTGCAGATTCAAAAGTAAACAA
CTGAGTCTCTCGAACATAGAAACGATCAAGAAAATACACTACTTTCTGAATAGCATATGAACGA
GACGTTAACAATATTAACAGGTCACTCTACTAACATCATAAAACAAGCATGTCAAACACGAAAA
TGGAGGCAACCAAAAACGACATTTACAGAACTGGGGTGCAAAAAAAAGTTAAGGAAAAGATACT
TACAAGACTCCGGAACCATTTACTTTTTCCCTGAAATAAATAAGGAAACAAAAATCTGTTAGAT
AAACCTCAATGTTACCAAGCATTGTGGTAACATAATAAGATGAGAAGAATGACAGAACATCACT
ACAACTATACAACATACAGTGTGAAGGACTGTAAAACAAAACTGCTCCTTTTAGAATTGTGTTC
TTGCAAAACCACATCCTTGCATCTAAAGATTTTACAACACGCTCTGAAATCTCATGAAACAGCC
AGTTCCAAACCAATGTAAACTAAATCATATTGCAGGAAACATATAGTAAGTATAAACTTACAGC
ATCCGGCCTTCGGCACACTTCAGTTACTTGATAGTTTCTTTCATTATCATCTGCCGACATCTTG
TCCTCAGCACGTCCAAAGCTGGGCTTCTTGGATATACCTTTTTCAGTTACAGTTTTTGTAGTTT
TTCCTTCAGATACTGACACTACAAGATCTCGGTTCTTAACAAAGCTGCGCTTTTCGGGAGGGAC
TTCCTCTATAGTCACTTTGTCTCTAGGTCTCTTAAAAGATCCTGTATCCTTTTTACCATCAGAA
GTAATGTTCTGCAAAATGGTTGTATCCCATCCATCTCGTACTGTAACAGAACCATCAAGTTTCT
GTTTCTTCAGAGGCCTGTCATCCAATCCACTCGACTCTTGACTATATCTTTCTCCAGCGGGCAT
AGATTTTTGTTTAGTCAACTGCTTTTTAACATCATTTTCTTGAGCTTTCTTTGAAATGGAATGA
ATTGTCCTGGAGCCAGAAGCTTCAAAAGAGTTACTATATCTTTCTTCGCCAGGCATAGATTTTT
GTTTAGTTAACTGTTTTTTAACTTCACTTTCTTGATCTTTGCCATTATAATGATTTCCCCTAGA
GCCAGAATCCTTGTTAGACCTTTCTTCTGCAAGTGTAGATTTTTTTATAGCGAGTTGGTAGTGA
CCTTTTTCTTTCTCTTCTTTGCAACCATTACTGTTTTCTTTACAGTCAGAAGATTCAAAAGCGC
TGTCTTCGATTTTCCTAACTGAACCACTAGCTCCCCTAGCTAAAGGACCATTTGGTTTCAAACT
ATCTGACTTCCCATTTACGTCTGCTTCAATATTCTGCACCGCAGTTGCTTCTTTCTCAGAGCAC
GCTCTGTTAAAGATAAATTTAACTGCAAGAATTAGAGTGAAAAGAAGATATGATGTAAATAAAG
AATCAAGATAGCTATTGAGTAGAATGTCAAAGCTATCAACTAAGATGAAACAAATTGTACCGTC
AACTCCAGCAATCTTATCATCAATCGTATCCACAACTTTGCAACTTCCAACATCAAATGCTCGG
CAAAACACGAAGTCCGCTGAGTTGAATTTTTCATCCGAGGGTTGTGGATTTCTTTTGTCTTTTG
AAATGCATAGAACAGAGCATTTTCCACCGATTGCTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.101253639
Functional Information
Coding potential Y
Potential coding position 3665575-3663409(-)
Potential amino acid sequence MPGEERYSNSFEASGSRTIHSISKKAQENDVKKQLTKQKSMPAGERYSQESSGLDDRPLKKQKL
DGSVTVRDGWDTTILQNITSDGKKDTGSFKRPRDKVTIEEVPPEKRSFVKNRDLVVSVSEGKTT
KTVTEKGISKKPSFGRAEDKMSADDNERNYQVTEVCRRPDAGKSKWFRSLPWEESMREAEKKGT
VVLLQNLDPTYTSDEVEDIVYSALNQQCEARMIERTSVTIPHIGEALVIFKTREVAERVIRRLD
EGCLLLSSGRPLVASFAKITPPGKPSLFSGHIKLHKTQTRREMRDAVATSHSSQPNNLEFDMAM
EWCLHQARHEQASESVSKEAIGGKCSVLCISKDKRNPQPSDEKFNSADFVFCRAFDVGSCKVVD
TIDDKIAGVDVKFIFNRACSEKEATAVQNIEADVNGKSDSLKPNGPLARGASGSVRKIEDSAFE
SSDCKENSNGCKEEKEKGHYQLAIKKSTLAEERSNKDSGSRGNHYNGKDQESEVKKQLTKQKSM
PGEERYSNSFEASGSRTIHSISKKAQENDVKKQLTKQKSMPAGERYSQESSGLDDRPLKKQKLD
GSVTVRDGWDTTILQNITSDGKKDTGSFKRPRDKVTIEEVPPEKRSFVKNRDLVVSVSEGKTTK
TVTEKGISKKPSFGRAEDKMSADDNERNYQVTEVCRRPDAGKSKWFRSLPWEESMREAEKKGTV
VLLQNLDPTYTSDEVEDIVYSALNQQCEARMIERTSVTIPHIGEALVIFKTREVAERVIRRLDE
GCLLLSSGRPLVASFAKITPPGKPSLFSGHIKLHKTQTRREMRDAVATSHSSQPNNLEFDMAME
WCLHQARHEQASESVSKEAIGGKCSVLCISKDKRNPQPSDEKFNSADFVFCRAFDVGSCKVVDT
IDDKIAGVDVKFIFNRACSEKEATAVQNIEADVNGKSDSLKPNGPLARGASGSVRKIEDSAFES
SDCKENSNGCKEEKEKGHYQLAIKKSTLAEERSNKDSGSRGNHYNGKDQESEVKKQLTKQKSMP
GEERYSNSFEASGSRTIHSISKKAQENDVKKQLTKQKSMPAGERYSQESSGLDDRPLKKQKLDG
SVTVRDGWDTTILQNITSDGKKDTGSFKRPRDKVTIEEVPPEKRSFVKNRDLVVSVSEGKTTKT
VTEKGISKKPSFGRAEDKMSADDNERNYQVTEVCRRPDAGKSKWFRSLPWEESMREAEKKGTVV
LLQNLDPTYTSDEVEDIVYSALNQQCEARMIERTSVTIPHIGEALVIFKTREVAERVIRRLDEG
CLLLSSGRPLVASFAKITPPGKPSLFSGHIKLHKTQTRREMRDAVATSHSSQPNNLEFDMAMEW
CLHQARHEQASESVSKEAIGGKCSVLCISKDKRNPQPSDEKFNSADFVFCRAFDVGSCKVVDTI
DDKIAGVDVKFIFNRACSEKEATAVQNIEADVNGKSDSLKPNGPLARGASGSVRKIEDSAFESS
DCKENSNGCKEEKEKGHYQLAIKKSTLAEERSNKDSGSRGNHYNGKDQESEVKKQLTKQKSMPG
EERYSNSFEASGSRTIHSISKKAQENDVKKQLTKQKSMPAGERYSQESSGLDDRPLKKQKLDGS
VTVRDGWDTTILQNITSDGKKDTGSFKRPRDKVTIEEVPPEKRSFVKNRDLVVSVSEGKTTKTV
TEKGISKKPSFGRAEDKMSADDNERNYQVTEVCRRPDAGKSKWFRSLPWEESMREAEKKGTVVL
LQNLDPTYTSDEVEDIVYSALNQQCEARMIERTSVTIPHIGEALVIFKTREVAERVIRRLDEGC
LLLSSGRPLVASFAKITPPGKPSLFSGHIKLHKTQTRREMRDAVATSHSSQPNNLEFDMAMEWC
LHQARHEQASESVSK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017