Detail information of BGIOSGA001930_circ_g.1


General Information
CircRNA Name BGIOSGA001930_circ_g.1
ID in PlantcircBase osi_circ_008894
Alias Chr01:9289599_9290128(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 10022370-10022899  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA001930
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   AG-TG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATATACCATGCATGATTAGTAAATATAATTAGATTAGCAAAACATACAGCGTGTTTAATGCA
TTTCTTACTATTTAAGCATATAGAATGGTAACTCACgttagatttgaatattatgtgattgtga
gcaagtttgatatgaactatatctgcatggactcatgggacaaacattcataaacaatagccat
ctacaatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTAGATTTGAATATTATGTGATTGTGAGCAAGTTTGATATGAACTATATCTGCATGGACTCAT
GGGACAAACATTCATAAACAATAGCCATCTACAATGGTACGAGACTATGATACGCTGGTCCTTA
TTATTTTTAAAGTATAGAATATATAACTATTATATACTTGAAGAATGTTTATGTTTCTTCTTAC
ATTAAAGTGTACATTAAACAAATCAGAAGAAAAACATAAATAAATTTAGGTGAACTTGAGGAGA
TACATGAAATTAGCTTTGCAATTTACTGTTTTACAGGTTATATGATGAAATAAGCACATTACTG
GCAGACATGTGCAGCTTTCAATCATTACAAAGTACTGAGGCAGGGAGAGAATACAATAGCATTC
AGCATTTGTATTATGGATAAAGTCCACCAAACACAAAGGTGGATATTAATATACCATGCATGAT
TAGTAAATATAATTAGATTAGCAAAACATACAGCGTGTTTAATGCATTTCTTACTATTTAAGCA
TATAGAATGGTAACTCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021