Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA028463_circ_g.5 |
ID in PlantcircBase | osi_circ_007675 |
Alias | 8:15596381|15596906 |
Organism | Oryza sativa ssp. indica |
Position | chr8: 15596381-15596906 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA028463 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | BGIOSGA028463_circ_g.4 BGIOSGA028463_circ_g.6 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | BGIOSGA028463-TA:3 |
Conservation Information | |
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Conserved circRNAs | osa_circ_036752* |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
15596457-15596773(-) 15596382-15596388(+) 15596866-15596388(+) |
Potential amino acid sequence |
MNSSATALLDYSRVTTFPSNIFRCHHFRHQMPQQALQLHQSKIVHAP*(-) MAPEDIRWEGGDPGIIQQGRGATVHGGKKSSSRNGPMSGPGRGSRGPQKNTSRKEFPPSQNGVG KKSSDCIEILHTESLIKEVERVFSASNPDPLEMEKAKKVLKEHEQSLIDAIARLAEASDGESDG T*(+) MQLQGLLRHLMAKVMAPEDIRWEGGDPGIIQQGRGATVHGGKKSSSRNGPMSGPGRGSRGPQKN TSRKEFPPSQNGVGKKSSDCIEILHTESLIKEVERVFSASNPDPLEMEKAKKVLKEHEQSLIDA IARLAEASDGESDGT*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |