Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT3G13530_circ_g.7 |
ID in PlantcircBase | ath_circ_021502 |
Alias | Ath_circ_FC1955, Ath_circ_FC1956 |
Organism | Arabidpsis thaliana |
Position | chr3: 4415729-4418656 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT3G13530 |
Parent gene annotation |
MAP3K epsilon protein kinase 1 |
Parent gene strand | - |
Alternative splicing | AT3G13530_circ_g.4 AT3G13530_circ_g.5 AT3G13530_circ_g.6 AT3G13530_circ_g.8 AT3G13530_circ_g.9 AT3G13530_circ_g.10 AT3G13530_circ_g.11 AT3G13530_circ_g.12 |
Support reads | 1 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT3G13530.1:11 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.128881133 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
4418053-4415731(-) |
Potential amino acid sequence |
MAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDDNPPIPDSLSPDITD FLRQCFKKDSRQRPDAKTLLSHPWIRNSRRALQSSLRHSGTIKYMKEATASSEKDDEGSQDAAE SLSGENVGISKTDSKSKLPLVGVSSFRSEKDQSTPSDLGEEGTDNSEDDIMSDQVPTLSIHEKS SDAKGTPQDVSDFHGKSERGETPENLVTETSEARKNTSAIKHVGKELSIPVDQTSHSFGRKGEE RGIRKAVKTPSSVSGNELARFSDPPGDASLHDLFHPLDKVSEGKPNEASTSMPTSNVNQGDSPV ADGGKNDLATKLRATIAQKQMEGETGHSNDGGDLFRLMMGVLKDDVIDIDGLVFDEKVPAENLF PLQNLNHKNIVKYLGSSKTKTHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLV YLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLNEADVNTHSVVGTPYWMAPEVIEMSGVC AASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDDNPPIPDSLSPDITDFLRQCFKKDSRQ RPDAKTLLSHPWIRNSRRALQSSLRHSGTIKYMKEATASSEKDDEGSQDAAESLSGENVGISKT DSKSKLPLVGVSSFRSEKDQSTPSDLGEEGTDNSEDDIMSDQVPTLSIHEKSSDAKGTPQDVSD FHGKSERGETPENLVTETSEARKNTSAIKHVGKELSIPVDQTSHSFGRKGEERGIRKAVKTPSS VSGNELARFSDPPGDASLHDLFHPLDKVSEGKPNEASTSMPTSNVNQGDSPVADGGKNDLATKL RATIAQKQMEGETGHSNDGGDLFRLMMGVLKDDVIDIDGLVFDEKVPAENLFPLQNLNHKNIVK YLGSSKTKTHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDI KGANILTTKEGLVKLADFGVATKLNEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTV IELLTCVPPYYDLQPMPALFRIVQDDNPPIPDSLSPDITDFLRQCFKKDSRQRPDAKTLLSHPW IRNSRRALQSSLRHSGTIKYMKEATASSEKDDEGSQDAAESLSGENVGISKTDSKSKLPLVGVS SFRSEKDQSTPSDLGEEGTDNSEDDIMSDQVPTLSIHEKSSDAKGTPQDVSDFHGKSERGETPE NLVTETSEARKNTSAIKHVGKELSIPVDQTSHSFGRKGEERGIRKAVKTPSSVSGNELARFSDP PGDASLHDLFHPLDKVSEGKPNEASTSMPTSNVNQGDSPVADGGKNDLATKLRATIAQKQMEGE TGHSNDGGDLFRLMMGVLKDDVIDIDGLVFDEKVPAENLFPLQNLNHKNIVKYLGSSKTKTHLH IILEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGL VKLADFGVATKLNEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYD LQPMPALFRIVQDDNPPIPDSLSPDITDFLRQCFKKDSRQRPDAKTLLSHPWIRNSRRALQSSL RHSGTIKYMKEATASSEKDDEGSQDAAESLSGENVGISKTDSKSKLPLVGVSSFRSEKDQSTPS DLGEEGTDNSEDDIMSDQVPTLSIHEKSSDAKGTPQDVSDFHGKSERGETPENLVTETSEARKN TSAIKHVGKELSIPVDQTSHSFGRKGEERGIRKAVKTPSSVSGNELARFSDPPGDASLHDLFHP LDKVSEGKPNEASTSMPTSNVNQGDSPVADGGKNDLATKLRATIAQKQMEGETGHSNDGGDLFR LMMGVLKDDVIDIDGLVFDEKVPAENLFPLQ(-) |
Sponge-miRNAs | ath-miR865-3p |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017;Chen et al., 2017a |