Detail information of AT3G13530_circ_g.7


General Information
CircRNA Name AT3G13530_circ_g.7
ID in PlantcircBase ath_circ_021502
Alias Ath_circ_FC1955, Ath_circ_FC1956
Organism Arabidpsis thaliana
Position chr3: 4415729-4418656  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT3G13530
Parent gene annotation MAP3K epsilon protein kinase 1
Parent gene strand -
Alternative splicing AT3G13530_circ_g.4 AT3G13530_circ_g.5 AT3G13530_circ_g.6 AT3G13530_circ_g.8 AT3G13530_circ_g.9 AT3G13530_circ_g.10 AT3G13530_circ_g.11 AT3G13530_circ_g.12
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G13530.1:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAAATAAACAAAAAAAGCTACTTACTCCAAAATAATGTGAAGGTGAGTCTTTGTCTTCGACGA
CCCAAGATACTTCACAATGTTTTTATGGTTCAAGTTctgcagaggaaaaagattctccgcgggc
actttttcatcaaatacctgagaaacaagatatggaaatattatagcagtatactacttgaaat
atcaaacg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCAGAGGAAAAAGATTCTCCGCGGGCACTTTTTCATCAAATACCTGAGAAACAAGATATGGA
AATATTATAGCAGTATACTACTTGAAATATCAAACGTCCAAACTTGAGACAGAACATACCAAGC
CATCAATGTCAATAACATCATCTTTCAAAACACCCATCATCAAGCGAAAAAGATCACCACCATC
ATTTGAGTGCCCTGTTTCCCCCTCCATTTGCTTCTGAGCAATTGTAGCCCTCAATTTTGTAGCC
AGATCATTCTTTCCACCATCTGCAACAGGAGAATCACCTTGGTTGACATTTGACGTAGGCATGG
ATGTTGAGGCTTCATTTGGTTTTCCCTCAGACACTTTATCCAATGGGTGAAATAAATCATGCAA
AGAAGCATCCCCAGGAGGATCACTAAACCTAGCCAGTTCATTCCCACTAACACTAGATGGAGTC
TTCACAGCCTTTTAAGAGAGAAATACCAATCAAAACAAATCTAGTCAGTTTACAGGTTTCCAAC
TCAGTAAATAGAGCACTAGGTCTGAACACGTCATTCAACAAAGAAAGGGAAAGTATTGCAGTAA
GAACATAATCTTGTAAAAAAGCAAGACCAAGGCCCAACAACAAACAAAACCAGTCTCACTATAC
AAGCCTCTATGCATGTAGGTGTGAAATTTGCAAAACAAATAAAGAAGTATATAATACAGTACAA
GTCGGTGACCTGTTTTGTTTTTATCGGTAAGGAACTTATTAATCAACTTAACACAAAAGCACGA
CTCGTGATTTACCATATTATCTAAGAAAATGCTAGGACAGTAATGACGTAACAGCACAACTAAC
CTTTCGAATCCCACGTTCTTCACCTTTGCGGCCAAAACTATGTGATGTCTGGTCCACTGGGATG
GATAATTCTTTGCCAACGTGCTTTATTGCTGAAGTATTTTTTCTAGCTTCAGAAGTTTCCGTTA
CAAGATTTTCAGGTGTTTCACCACGTTCAGATTTCCCATGAAAGTCTGATACATCTTGAGGTGT
CCCCTTAGCATCCGAAGATTTCTCATGGATCGACAGTGTAGGAACTTGATCTGACATAATATCA
TCTTCTGAATTATCTGTTCCTTCTTCACCAAGATCACTGGGTGTCGACTGATCTTTCTCAGACC
TAAAACTCGACACCCCTACCAGAGGTAATTTGCTTTTCGAGTCCTGGACAAGAAAAGTACTATC
ATTAGCTTTAGAAAGTTCATCTCTAGCTTTAATGCGTTCTCCTGTTCATTTATCAACTCTTTAT
CTGCATATTCAAAACATTGAATGATGGTAAATTAGAGCCGAGGATTGAGTCAGGAATCTTACAG
TTTTTGATATTCCCACATTTTCTCCTGAAAGGCTTTCTGCTGCATCTTGACTACCTTCATCATC
CTTCTCTGAACTTGCAGTGGCTTCCTTCATATATCTGCAAAGGATGAAGTACCCAAGGACATTA
CAGGTTCAGTGGATGCAAGGAACACTATTGCGTGTTCTTTAAGATGGGATATATAATACATTTT
GTAATATTCTTCCAAAAAATAAAGTTAAATACATAGGTTCTCACTTGATGGTGCCACTATGCCG
AAGTGATGACTGCAAAGCTCGTCTAGAGTTTCGTATCCAAGGGTGAGAGAGCAGTGTCTTTGCA
TCAGGCCTCTGCCTGGAATCCTGTAAAACACAAGATACAAATCAGATGTACATACTGGATATTA
AATAAATCATTGTCTAGGTTCTGGTACAGAGGTAGGTGAATAAACCCTATAGCAGAAAATTATA
CCTTCTTGAAGCACTGTCGTAGAAAGTCCGTAATATCTGGAGAAAGACTATCAGGAATAGGAGG
GTTGTCATCCTGAAACGAAACCATAAGAAATAGTTTGTCACTTCTGGCTAACAGCTTTTGCATT
TTTCAGGAGAGAAGTGTTTACGACATGGAGAAGGGGACGGAAGAGACACCTAAATTTGATTGAC
TTAAATGCAAACTCATAAAATGTTGTCAAATACCTGAACAATACGAAAGAGGGCTGGCATGGGT
TGCAGATCATAGTAAGGAGGTACACATGTCAGAAGTTCGATAACAGTGCATCCAACGCTCCAAA
TGTCAGAAGCAGCACAAACTCCTGACATTTCAATAACCTGAAACAGAAGTTGGGCTTCTGTCAA
TACGTACATAATCAGGTAAAAGTTCTCTAAAGGAGCAAACAAAAGCATCTTTCAAACAACAACA
AATATTGTTTCAAAACTGCGTACGAAAGCTATACAGAATATGGAGATGGAAAATATATAATCAA
AGGTGTACCTCAGGAGCCATCCAGTAAGGAGTTCCAACCACCGAGTGAGTATTAACATCAGCCT
CGTTAAGTTTAGTGGCAACTCCAAAGTCAGCAAGCTTCACAAGACCCTGAAGTGTGATGTAGTC
AAGTATCTTTCTAAGGAAAAAGCCTAGAAGAATCTTATCCAGCAGATCTCAAAACAAAAACACA
CTGAAGACATGTCTGAGAATAGATAATATAGAAAACACACCTCCTTTGTCGTCAAAATATTTGC
ACCCTTAATATCACGGTGTATAACACCCTGCTCATGCAGATATACCAAACCTTCCAAGACCTGT
ATTCACTAGTTAGTACACAATGCATAACGAAACTTAACTCAACTTGAAAGATGTATACAGACCT
GAGCAATGTAAACAGCCACCAAAGATTCTGGGAAAGGTCCAAATTTATTTGGTTTAATAATGTT
TGCAAGAGAGCCATTCTCAACGTACCTGCAAACACATAATTGAACTTGAGTTTCCCGTCCATAG
TCCAGAGTGGACCAAAATAAACAAAAAAAGCTACTTACTCCAAAATAATGTGAAGGTGAGTCTT
TGTCTTCGACGACCCAAGATACTTCACAATGTTTTTATGGTTCAAGTT
Conservation Information
Conserved circRNAs NA
PMCS 0.128881133
Functional Information
Coding potential Y
Potential coding position 4418053-4415731(-)
Potential amino acid sequence MAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDDNPPIPDSLSPDITD
FLRQCFKKDSRQRPDAKTLLSHPWIRNSRRALQSSLRHSGTIKYMKEATASSEKDDEGSQDAAE
SLSGENVGISKTDSKSKLPLVGVSSFRSEKDQSTPSDLGEEGTDNSEDDIMSDQVPTLSIHEKS
SDAKGTPQDVSDFHGKSERGETPENLVTETSEARKNTSAIKHVGKELSIPVDQTSHSFGRKGEE
RGIRKAVKTPSSVSGNELARFSDPPGDASLHDLFHPLDKVSEGKPNEASTSMPTSNVNQGDSPV
ADGGKNDLATKLRATIAQKQMEGETGHSNDGGDLFRLMMGVLKDDVIDIDGLVFDEKVPAENLF
PLQNLNHKNIVKYLGSSKTKTHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLV
YLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLNEADVNTHSVVGTPYWMAPEVIEMSGVC
AASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDDNPPIPDSLSPDITDFLRQCFKKDSRQ
RPDAKTLLSHPWIRNSRRALQSSLRHSGTIKYMKEATASSEKDDEGSQDAAESLSGENVGISKT
DSKSKLPLVGVSSFRSEKDQSTPSDLGEEGTDNSEDDIMSDQVPTLSIHEKSSDAKGTPQDVSD
FHGKSERGETPENLVTETSEARKNTSAIKHVGKELSIPVDQTSHSFGRKGEERGIRKAVKTPSS
VSGNELARFSDPPGDASLHDLFHPLDKVSEGKPNEASTSMPTSNVNQGDSPVADGGKNDLATKL
RATIAQKQMEGETGHSNDGGDLFRLMMGVLKDDVIDIDGLVFDEKVPAENLFPLQNLNHKNIVK
YLGSSKTKTHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDI
KGANILTTKEGLVKLADFGVATKLNEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTV
IELLTCVPPYYDLQPMPALFRIVQDDNPPIPDSLSPDITDFLRQCFKKDSRQRPDAKTLLSHPW
IRNSRRALQSSLRHSGTIKYMKEATASSEKDDEGSQDAAESLSGENVGISKTDSKSKLPLVGVS
SFRSEKDQSTPSDLGEEGTDNSEDDIMSDQVPTLSIHEKSSDAKGTPQDVSDFHGKSERGETPE
NLVTETSEARKNTSAIKHVGKELSIPVDQTSHSFGRKGEERGIRKAVKTPSSVSGNELARFSDP
PGDASLHDLFHPLDKVSEGKPNEASTSMPTSNVNQGDSPVADGGKNDLATKLRATIAQKQMEGE
TGHSNDGGDLFRLMMGVLKDDVIDIDGLVFDEKVPAENLFPLQNLNHKNIVKYLGSSKTKTHLH
IILEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGL
VKLADFGVATKLNEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYD
LQPMPALFRIVQDDNPPIPDSLSPDITDFLRQCFKKDSRQRPDAKTLLSHPWIRNSRRALQSSL
RHSGTIKYMKEATASSEKDDEGSQDAAESLSGENVGISKTDSKSKLPLVGVSSFRSEKDQSTPS
DLGEEGTDNSEDDIMSDQVPTLSIHEKSSDAKGTPQDVSDFHGKSERGETPENLVTETSEARKN
TSAIKHVGKELSIPVDQTSHSFGRKGEERGIRKAVKTPSSVSGNELARFSDPPGDASLHDLFHP
LDKVSEGKPNEASTSMPTSNVNQGDSPVADGGKNDLATKLRATIAQKQMEGETGHSNDGGDLFR
LMMGVLKDDVIDIDGLVFDEKVPAENLFPLQ(-)
Sponge-miRNAs ath-miR865-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a