Detail information of Zm00001d034018_circ_g.7


General Information
CircRNA Name Zm00001d034018_circ_g.7
ID in PlantcircBase zma_circ_000891
Alias circ2674
Organism Zea mays
Position chr1: 281279120-281283272  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d034018
Parent gene annotation Tousled-like kinase 1
Parent gene strand -
Alternative splicing Zm00001d034018_circ_g.6
Support reads 4
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d034018_T030:4
Zm00001d034018_T029:4
Zm00001d034018_T008:4
Zm00001d034018_T019:4
Zm00001d034018_T020:4
Zm00001d034018_T004:4
Zm00001d034018_T032:4
Zm00001d034018_T015:3
Zm00001d034018_T024:4
Zm00001d034018_T039:4
Zm00001d034018_T026:4
Zm00001d034018_T021:3
Zm00001d034018_T025:4
Zm00001d034018_T042:4
Zm00001d034018_T014:4
Zm00001d034018_T041:4
Zm00001d034018_T022:4
Zm00001d034018_T006:4
Zm00001d034018_T003:4
Zm00001d034018_T017:4
Zm00001d034018_T027:4
Zm00001d034018_T040:4
Zm00001d034018_T046:4
Zm00001d034018_T001:4
Zm00001d034018_T009:4
Zm00001d034018_T043:4
Zm00001d034018_T036:4
Zm00001d034018_T045:2
Zm00001d034018_T037:4
Zm00001d034018_T016:4
Zm00001d034018_T007:4
Zm00001d034018_T038:4
Zm00001d034018_T044:4
Zm00001d034018_T035:4
Zm00001d034018_T010:4
Zm00001d034018_T012:4
Zm00001d034018_T034:4
Zm00001d034018_T031:4
Zm00001d034018_T002:4
Zm00001d034018_T028:4
Zm00001d034018_T013:4
Zm00001d034018_T005:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCGCGGAGACAGCCTTGCCGGCCATCCGTGCCTCGAGCTTGGCGAGCTTCGACGAAGACGGGT
TGGAATTGGACGATAGGTGCTGCACTATGTCCTCCCcctgtaaagcagctctgtcgtcatggcc
cagttgaacactcgatcggggttcctgttggaatgtgctcataattagcaggttatgataaatt
gttgtgtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTAAAGCAGCTCTGTCGTCATGGCCCAGTTGAACACTCGATCGGGGTTCCTGTTGGAATGT
GCTCATAATTAGCAGGTTATGATAAATTGTTGTGTGATAGGATGCCATTGATCAACTGTTTATC
ATTGAATGTGAAAGTGTCTTCGCTTTCCAGTGATGCAGAATGTAAATATGATAAAGAGAAAATA
GCTCCATGTCTGTGGGCGAAAAATGTTTGTGTATGTAAATGTAGGGACAAACATGATGGTTTAC
CCAAAACCTTTCAAACTATCCGTGTGTCCAATTGTCGCAAACAAGACCTTAGGTGCCATTATAT
TTTTCAATACTATTTGAATCAGGATATAAAACACTATAGACTTGTTAACGAGTTTCTCTAAAAG
CATATCCTTCAAAAGAACACTCTAAGACTACTGTTATGGTCGCTAGATCGGTGAGGGATTGGAG
ACGGGTATCGATGGACAGGAACGTCGGCCGGGGGCCTCTGTCCATGACCGAGCAAGAGGAGGAT
TTGTCCCTTCTAATTCTTGCCTACTTTATTTCTCATCCATTGATTACATAAATAGGCCAGTTGG
CCGCCCCTATCTAGCTAGAGATCCTTATCTCCTTAAAACTATCCTAAAAACTCTCAACAACTAC
TAACTGATAACCTTCCTAGATAATCTCAACTAATCTCCTAGATAATCTCAACTAATCTTCTAAT
CTTATCTCTAACTATCCTTATCTAATCCCCCTTGGAGGGCCCATGGCTGCCCAAGCCGTGGCGC
GGCCTCGTCGACGGCATCACCGGCAACCTCTACTACTGGAACCCCTACACCAACGTCACGCAGT
ACGAGCGGCCTACGGCCGCGCGCCCGCGCCTCTGCCTCTTGTGGGTCCTTGGGTTCCCGACCAG
GCGTACTTCGACGATCTGTTTGCGAGGCTCAATGCAATCAACATGGCGCTCTCCAGCAGCATGC
CAGCACCAGCGGCCTAGCCGTCGTCGCCCGCTCCGGCACCTACATCTTCATCTTCATGGGCGGC
AATGCCTAACAGTTGCGTTGCGCCCTCAGGACCGTCTTCATCACCAGCTGCATGGCTGAAGAAG
CCAGGGGCAACCATACCAGGACCGGTGTACCAGCCCCTGGCGCCGACCCTTGCTGCTGCTACCA
TGTCGACGACTGCAGCAACCCCTCCTTCCCCATCTACGACAGCAGCGGTGACCCTCTAGGGTGG
TTCAACGGCTGCGAGCAGTTCTTCTAGAGCCAACGCACTCTAGAGTCCAACAAGGCCTGGCTGG
CATCGTATCACCTCACCGGCCACACACATACGTGGTTCTGAACGCGACGAACATGAGATCACGT
GGCCACAGTTCAAGATCATGTGCCAGTAGCGCTTTGGTTCCCTCGCACCAGTGGCAACTTCTGC
TGCCACGTTTGTCGTGCCCTCATCGTCGACACCACCCTCGTCATCAGGGACAGCCATCACCGCT
ACCCTTGACCCCAAGAGCGATGTCCAGAAGAGGGTGGTTGCTTCGCGACAGACGGCGGCGGCGG
CCGTCCACCTGCAGGCTGCAGCATGCGGTTTCCTAGCACGTCGACAGGTGAAGCAGATGATGGG
GGTGCTCCATTGCGGGGGAGTCGTAGCTTGCACCAGCGCGCCCGAGCAACGTGGTGGTTGTTCA
CCTCCGCGTACAAGAGGCTGCAAGACATGGCGCCCCTCTGCAACGCTCCGTCCGGCACTGGCCT
TCATTTGCGGCGACCGGGCAACTACCACGACTACTCTCCTTCGTACAAGGGAGTCTGTTGGCCT
CGCCACCACCTGCTCCAGCCACACCACCCTATGCGCACTGGTGGTCGCGGGACCATAAGGGGCT
GCACTGCACGGGATTCACTTGCTGCAAGCAACACCAACGTAGGCCTCCACGGGCCCGCCTCCAA
AGGCTGTTGTGTCTTCACCTCCGTGGTTCCAACTCACGCCCTCCTCTTCGCTGTGCAACGTTTC
CTTGGGACACAGGATGATGCTTGCAGTTGCAGTATATTTAGAAAAATTAAAAGATGAGCCGAGA
TGTAAAAGGTTGTTTGTTGGATGCTGCACCTCGAGGACGAGTTGCTTGTCCAAGGGGGGTGTAG
TGTCAGGGCCTAAGGAGGCCCACGGAGGGGCTGCGACAGCAGCAGCCATGGTCCCTCCAAGGGG
GATTAGATAAGGATAGTTAGAGATATGATTAGAAGATTAGTTGGGATTATCTAGGAGATTAGTT
GAGATTATCTAGGAAGGTTATCAGTTAGTAGTTGTTGAGAGTTTTTAGGAGAGTTTTAAAGAGA
TAAGGATCTCTAGCTAGATAGGGGTGGCCAACTAACCTATTTATGTGATCAATGTATGAGAAAT
AAAGTAGGCAAGAATTAGAATGGAGAAACCCTCCTCTTGCTCGGTCGTGGGCAGAGGCCCCTGG
CCGACGTTCCTGTCCATCGATACCCCTCTCCAATCCCTCACCGATCTAGCGACCATAACAACTG
CAGACCTTGTATCCTAGTCCTTTGATTAAGGCATTATTAAATTTTAACAAGCCCATGCTATCTT
TGAACATAAGCTTGTATGGATTTATATCTTTCATTAGATCTGCAAAATTTCAAAATTCTCAACA
TGTAGTTTAAAGGTGTCTATGGGTAGGTTCAATAAATTCATAGTTACCAAAACTATAAAGTCAT
AAGTGTTCATAATTTACTACAAGATCTATTTCAGCAACCTGTAACGGACAAAAAATACCCTTAA
ATAGAAAGTGCATTCAAAACAACAATTTCTTCAACAATATATTCAGTGTGTTTAGGTATCATGA
CCTAGAAATAGCTCTGATGAGAAGTGCCAGAAGGTTGCACATGAATATCTAAAAGATAATAGCA
CTGTACAGATACGAACTGTCATTGCCGACAAACAAATCAAAACCAGCTCGGAATTTAAGGCCCT
GTTTGGGAACAAAGTTTTTGAAAACCACAGTTTTTGAAATACTACAGTATACTTTAGTCAGTTT
ACAATACCGCAGTTTTGAAAACTGAGGTCCAGAGCTAAGTTTAGAATGCCTTAAAACAACTATA
GTATTTGCAATACTTCAGTTTTGAAAACAGAGATTTTAGCCAGCTTGCCAAACACCATTCTGTA
TATAATACTGCAGTATTTGAGAATACTGCAGTATTCTTCCAAAACTGTGAAAAACTTCACTCCC
AAACACCCCCTAAATTGGGATCTTGGTAGTGATAATTACACAGCAATACAGCATACCTTGTTGG
TTAATTTATCTAGTTGGCCATTTGTTACAGCTGCTGAGGAAGTTGAAGTCAATCGTGTTTGATC
AGCAGCCCTTGAGCCACGCCCTCGGCCTGTACCAGCACGACCCCTTCCACGGCCTTGTTTTTTC
CTACTTGAATTGTCCAAGGAAGGTTTTGTATCTGTGACGCCTAAAATCTTTGCTGCCTCATTTA
CCGAACCCTGATTCTCAAATTACAAGATAATCAATTAAAAGAAAATAATGTTTAGACAAATGGG
CGCACAAAAGAGTGCATGAGAGAATCATAACAGATTTCTCTATTCAGTTCCTATCAGATGAGCC
CACCTCAAAATTTCCAAGAGCAAGCATGTTGTCACCATCTGGAGATCTCGGACGCTTCAGGGTA
TTCTTTTGTATCAAGAACTCCTCACAGTTCTAATCAGCAAAAACAGAAAAAATCGAATGGGATC
AGTGCCAGCATAATCGATAAAGTAGAGGTGGAATTAATTGACTAATTTGTGGTCAGTTACACTA
GCAAACCACGTGCACATGTTTATAATAACAAAAGAAATAGCACAAATAGTTCTGGCCAGAAAGA
GATCATAGCAACATAGCCAATGTGTGAGCAAGGAAATCGAAGATGCAAGCAATCACGCTACTGG
ACTTAAGCCAAAAAAGAAGCGTGGAAATAAGAGGAGAAGCTCAAGGTTTAAGACTGACATCGTC
ATCGGAAGAGGAAGTCTCAGGCAGCTCCTCCTGGTCCATGAACGATATGACGGGGGCAGACATG
GGATGGTGCGGCGGTGACGATGGCGCGGAGACAGCCTTGCCGGCCATCCGTGCCTCGAGCTTGG
CGAGCTTCGACGAAGACGGGTTGGAATTGGACGATAGGTGCTGCACTATGTCCTCCC
Conservation Information
Conserved circRNAs NA
PMCS 0.011939241
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b