Detail information of BGIOSGA011703_circ_g.9


General Information
CircRNA Name BGIOSGA011703_circ_g.9
ID in PlantcircBase osi_circ_012813
Alias Chr03:756682_756880(ZS97RS2), Chr03:750870_751068(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 1019626-1019824  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2, CIRCexplorer2
Parent gene BGIOSGA011703
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA011703_circ_g.2 BGIOSGA011703_circ_g.3 BGIOSGA011703_circ_g.4 BGIOSGA011703_circ_g.5 BGIOSGA011703_circ_g.6 BGIOSGA011703_circ_g.7 BGIOSGA011703_circ_g.8
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA011703-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATATACATAGCTTTATTGTTATATTATTATTTTCAGATAAAGGAGCTGGAGCTCAAGTTGAAGG
AACAAGAACACCATCGATCAGTTGCAGAATCTAAGgataaaggagctggagctcaagttgaagg
aacaagaacaccatcgatcagttgcagaatctaaggtgatttgtaacatgtggctagtgtctct
gacccta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATAAAGGAGCTGGAGCTCAAGTTGAAGGAACAAGAACACCATCGATCAGTTGCAGAATCTAAG
GTGATTTGTAACATGTGGCTAGTGTCTCTGACCCTAATATACATAGCTTTATTGTTATATTATT
ATTTTCAGATAAAGGAGCTGGAGCTCAAGTTGAAGGAACAAGAACACCATCGATCAGTTGCAGA
ATCTAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021