Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os11g0148400_circ_g.2 |
ID in PlantcircBase | osa_circ_008453 |
Alias | Os_ciR7119 |
Organism | Oryza sativa |
Position | chr11: 2236010-2237050 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os11g0148400 |
Parent gene annotation |
Conserved hypothetical protein. (Os11t0148400-01) |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 2/1 |
Tissues | root/root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os11t0148400-01:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.15402171 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2236026-2237047(+) 2236054-2236982(-) |
Potential amino acid sequence |
MSSDQEGWSLFTSVSENLNNVQTTDHVGTRESAGQSVKAFSYFPPNNAAILDLYKESEPIDAVH IMQCSSESVQSSSDMFSNTEMNSSFGTDENHSIKSASDRILIDFYHKLREESLTVISQYKKDLK ESQKNSMLSDEKNEVMTETEREIQEICKELQDSSLAKGFCKDEHPSKDVCISELLNSAKEDHLK DFDKEYHLTEIIAMDVPKSMSSDQEGWSLFTSVSENLNNVQTTDHVGTRESAGQSVKAFSYFPP NNAAILDLYKESEPIDAVHIMQCSSESVQSSSDMFSNTEMNSSFGTDENHSIKSASDRILIDFY HKLREESLTVISQYKKDLKESQKNSMLSDEKNEVMTETEREIQEICKELQDSSLAKGFCKDEHP SKDVCISELLNSAKEDHLKDFDKEYHLTEIIAMDVPKSMSSDQEGWSLFTSVSENLNNVQTTDH VGTRESAGQSVKAFSYFPPNNAAILDLYKESEPIDAVHIMQCSSESVQSSSDMFSNTEMNSSFG TDENHSIKSASDRILIDFYHKLREESLTVISQYKKDLKESQKNSMLSDEKNEVMTETEREIQEI CKELQDSSLAKGFCKDEHPSKDVCISELLNSAKEDHLKDFDKEYHLTEIIAMDVPKSMSSDQEG WSLFTSVSENLNNVQTTDHVGTRESAGQSVKAFSYFPPNNAAILDLYKESEPIDAVHIMQCSSE SVQSSSDMFSNTEMNSSFGTDENHSIKSASDRILIDFYHKLREESLTVISQYKKDLKESQKNSM LSDEKNEVMTETEREIQEICKELQDSSLAKGFCKDEHPSKDVCISELLNSAKEDHLKDFDKEYH LTEIIAM(+) MTSPPGRCSLTLVHPLLLFLLNGILYQNPSNDPLWHC*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |