Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d037772_circ_g.1 |
ID in PlantcircBase | zma_circ_009061 |
Alias | zma_circ_0002331 |
Organism | Zea mays |
Position | chr6: 137000289-137010205 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d037772 |
Parent gene annotation |
catalytics |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d037772_T001:9 Zm00001d037772_T013:7 Zm00001d037772_T003:9 Zm00001d037772_T010:8 Zm00001d037772_T007:9 Zm00001d037772_T006:8 Zm00001d037772_T002:8 Zm00001d037772_T014:6 Zm00001d037772_T015:4 Zm00001d037772_T004:8 Zm00001d037772_T005:9 Zm00001d037772_T009:8 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.113009743 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
137006712-137000393(+) 137000305-137010127(-) 137000391-137010075(-) |
Potential amino acid sequence |
MIWETNLRISTASNPQLHVMSNNKVANDNLVLVSAGRWIYAVSSTDGAILWEKEFSLDGLEIKR ILQSPENGIVYALGLAGSSKLALYHLSAKTGEILKDIQESLPGGLLGETVLVSDNVLVALDKAR SSLLVIEFKGERISYNKVHVSDLVQDLSGSLELQSLSNGVISLQTSSSISLLKLKGTDGLEVLQ RFDQPAAVSDSLTITEKEAAFAVVQHLGSEIEFIVKSTSDLSSEIIKEKLVIDQNRGNVEKVFL NSYIRTDRSHGFRALVVMEDHSLLLIQQGEVVWSREDGLASIVDVTTSELPVEKDGVSVADVEH NLFEWLKGHMLKLKGSLMLANADEVAAIQAMRLKSSEKNKMTRDHNGFRKLLVVLTKAGKVMAL HTGDGRVIWSKLVPSLRASRCGGVPSALRIYQWQVPHHSVMRENPSVLVVGKFGAEPSIPGVFS ILDSYSGEELNSMKLDHSVVQIIPLTLKDSSEQQLHLFVDSDSNAHLYPKSPDALNVFLHEMSN LYFYSVDIQANVIKGYSLQKSCNLNVGDEYCFSTKELWFIIFPSDSERITISETRKMNEVVHTQ AKISGDHDVMYKYLSKNLVFVATLSPKAAVDIGSALPEEASLVAYLIDAVTGRILHRVTHHGAQ GPVHAVLSENWVVYHYFNLRAHRFEMAVIEIYDQSRAGNKDVTKLILGKHNLLAPITSYARPEV AVKSQSYFFTHSVKAMAVTQTAKGITSKQLLLGTIGDQAPEVHWQSKASSLPQPKEWKEACCSL DRGKCDLIS*(+) MYFWCLVTNSTQQKLLGSDPLSRLCNCHCFY*(-) MRSHFPLSRLQHASFHSFGCGKLLALLCQCTSGAWSPIVPNRSCLEVIPLAVCVTAIAFTEWVK KYDWDFTATSGRA*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |