Detail information of Solyc06g071200.2_circ_g.1


General Information
CircRNA Name Solyc06g071200.2_circ_g.1
ID in PlantcircBase sly_circ_002046
Alias 6:40178297|40182346
Organism Solanum lycopersicum
Position chr6: 43788397-43792446  JBrowse»
Reference genome SL2.50.38
Type   e-circRNA
Identification method CIRI
Parent gene Solyc06g071200.2
Parent gene annotation Transportin MOS14
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues fruit
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Solyc06g071200.2.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTATTTTCTCTTTCAGGTTATCTTCAGAGTCCAATATCCTCTGGATTACTTTGATATCTCCA
TGGAGGACCAGAGAGATTTTAAGCAGACAAGATATGttatttctgaattgatacattacacagc
agcaagaaattccggcggagtttcgtcagagttggccttgattcaagtaattgttcctcaagtt
atgagtct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTATTTCTGAATTGATACATTACACAGCAGCAAGAAATTCCGGCGGAGTTTCGTCAGAGTTGGC
CTTGATTCAAGTAATTGTTCCTCAAGTTATGAGTCTGAAACCTCAGCTCAGAGATCCGTCAAAG
GTATATATTTACCTTGTGCATTGAATAGGGATGTTCGATTGGTCCATTCTTTTTCGTTTCCTAA
ATAACATAAAGCTTAGACATCTAGAAATTTGTTGGTTTTCTTTTTTTTGGGAGGCATTTTGATG
AAAATATGTTAGGTGCAGGATGTTATATGGTGATCAAATTGAAAACCAACGTGTTGTTGTGGTT
ATTTTGTTTTTTGGTTCTAAGAAAATTTAAATGTACTACCTTTTAAGATACTTCGAATGATTGG
GTCATTTTATGGTTGGTATTTACAATTTCCATTTCCTCTCCTTCTGGAGTCCCAGTTTGGGTGA
TTCCCCAAAATCTCATTCTAGGCCATTGAGTTCCCTAAAAATCTTTTTACAGGTTGAAAACCTT
TACAAAGTATTTTATGCTCCTAATGTCTGACATATTACTCCTCCTATGCACTTGTTTTCTTTAT
GTAGCGGGTAATATACTTGGTCTACTGCTGATTGTTGGGTAGTCTTCCATTACGCAGAATTGGT
TGGTGGGTGATCCAGTTGCAATCAGTTGAAAGCAAATTTAAATATTATTCTTGGGACTTCCTTT
TTGTTTTGATAAGTCAAGATCATTCATTGATGTCACCCCGAGATGGTGTCAAAACTTATTACAC
TCTTAGCGGGTGGCTCAACCTGCATTCTCTATTTAGTTGTTCTAATCATCTGGTAATCTTTCTT
TTTTTCACTAAGAATATATAACTCAGGAAATTCTTAATGCATCCTATGTCCTTTTTTTTAAACA
AGGTAAAATATATTATTACCAATTAGGGAAGCCCTATGTACAAGTCGATACCAAAAGAAGAGAA
CCTGCATCACAATATGGTTTTCAATTAAAGATATCTAATCGTCTATGCAAATAGGGACCTCACA
AGTCCACCAAAAAACTAGAGATAATAATTTACTTTGCAGTTTTACAAAGTCCTGTTCTACTCGA
CTACATATTTTGGATGTAGTCTACCTGTAAATATATAGATTAGTGATACTATCCTCAAAAAAAA
AAAACCCCACATGATTGCTAAAGGGGCCACACTTCATGCCCTTGACTTCTCCTCTCCCTCATGT
GAGTCCAACTTTATAGCGCCGTTTCTGGTATCACCCATTGTTTTCCGAACAAATTAAGGATCAC
CTGCCATAATCGTATAGCCATTTTACAATGCAATAGAGGATGGTCTACTTCTTCACCCAAGTTT
TTGCACATAAAACACCAACTAACACGTGATTTTCCTCTTCCTCATTCTTTTTGTTGTCAAGATC
ACAACCCTTGCTGCTAACCACACAAAGAAACACACCTTTCTTGGTGCTCTAGGGATCCAAATAG
CATCATGAGGAAAAATAAGTTCCTCTCTCACCAATAAGCTAGGAATAAGAACCGAGGGGCCGTT
GATAGTTGGATAAGAAACAATTTATTCTTGTATTAATTTCTTATAACTTATATTACGCTTGGTA
GGTATTTTTTTTGAGAAAGATAACGTTACTTCTAAATATCCACAGGGTATAGTTTCCCAACAGA
AGTATTACAACTTACAGGTTGTGCTTCAAGTTATCCCGACAAAAAGTCTAAAACATCAAAAATA
TCTTCTGTTTGAGCTAATCGTTTTTGCTCACACCAAAATAAAAATAGGCCTAAGCAATTCATCT
TAAGAATCTGTAAGTTGCTTTGTATTCCAAAACTCCTCTTGTTCCTCTCAATCCAGACTGACCA
CCAAATGCTAGCCGGGACAATCTTCCATCTCTCCTCCTCCTTACTTATCATACCATCCTTGTTC
CAGCATCTGAGGACACCCGCTATGCTTCCAGGTTTCACCCATTTGATCCCTTTTAGGCATATAA
ACATCCTCCATAGTTGGTCTGTCCACTTGCAATGCAAAAAAAGATGGCTGATTGTCTCAGTTTG
TATCTCGCATAGAATACATTCAACGACTAATTGATGACCCCTTTTCCTTAGGTTTCCCTGTGTC
AAGGCTGCCTCTTTTGCCAAAATTCAGGTGAAACTCTCAACTTTGTAAGGAATCTTTGGCTTCC
AAATCATCTTTCAAGGCCAATCTCTTTCCTTCACTGATGCTAAATTCAGCTCCTTGTATGCTGA
GTTGACAGAGAACTTTCCATTCTTGTCTTTGCTCCATTCCAGTCTGTTCTCTCCTCCATTGAGG
TTATTGAAACCTGCTACTAAATTGTAAAATTCTGCATCTCTTTCCATCTCTCAATCATTCAGAT
GTCTCCTTAGGAATAAGTTCCATCCTTAACCAGTCAACATCATGGCAACTGGCATGTTGCTGTT
GACTTAATGTGAAGAGTTCTGGATGTTGTTGTTTCATAGTTCCTTGCCCTGCCCAATTGTCATG
CCAAAAGGATGTTCTCTGTCCATTCCCAATCTTCACCTTTGTTCTGATCTGCATTAATGACCAC
ATGTTCCTGATAGCACTCCAGACTGAGCACCCATAGGGTGTGGAATAAGTATGTATAACTAATA
GTCTAAAACCTCCATAACATAAGTAGATAGATTCACTTATACTGAATCTCTACATCACTAATAC
CTTCATAACTTTAACCAGCCACTAAACGACCCCTGATAGTATAAAACCATTTCCACTCTCCCAC
CACCGCCATACATCAGTAGTATTGTCTAGTGTATCCAGCACATACAATGTCTCATTCTGGCAAC
TAGTATTCTTGTAAAGCACATCCTTTCTCAATCTCTTATAGCCATGTGAAAGCTATGTCCCATC
AGATATTCAAACACACATGCATTTTTGTTGGTTTCCACATTATAAGCAGGTGGGAATGCTTCCT
CCAGAGTACTGTCACCCGCACAATCTCACTTCCATAACTTAATCATGCTATTACCAACTCTGAA
TTCTACCCATATTTATGATGTTCTTGGGAGTATATGCCCTTGTTTCTATTTTCACCATCTTCTA
TCCGTTTCTCCGTTGTGAAGGGGTTTTGCAGTGTCACGATAAGTTATTGAGCTTTAAAGTTACT
GTTTGGTATTCTCTCTTTTTTTAAAAATATTGTTATGTAAAAATTGCTGTTCTCTTAATTATTT
GACCATCATGTTGTTTATCTCTTCTCTTCCAGGATGAGGAGGATATTAAAGCCATTGCTCGTTT
GTTTTCTGACATGGGCGATGCATATGTTGAATTGATTGCTACTGGTATCTATAGTTCCTCTCTT
TCTTAGTTCCTTCCAGATGCAATTTCTTTGACTTCCCAAAGAAGTTTGGTGTGCATAAAAGTAT
GTGATAATTGTTCTTACTTATGTATAAGCAAAACTGACAACTGTATTCAGGTTCTGATGAATCA
ATGCTGATTGTACATGCATTACTTGAAGTTGCTTCACATCCTGAGTTCGATATTGCTTCCATGA
CTTTTAACTTCTGGCACAATCTTCAGATGATTTTGACAGAAAGGTGAATGCTGTTGGAATTTTC
AAATCGGTCTATTTGCTGCAAAACAGTTTTTGCATCTAAAATTATACTTATTCAGGGAGTCATA
TCTTGCTTGCGGCAATGAAACTTCCATTGAGACAGAAAAAACTCGTAGATTGCAGGTTTTCCGT
TCATCATATGAATCACTTGTCTCCTTGGTGAGTTCTCTGGAATTAGGAGCAGGCAGTTTGGTTT
TTTACTTATCGTGCATGGCTTCATATTGATCTTAAATTATTTCAGGAGACAAAAACTAATGCAG
TTTCTTCCTGGACGTGATACCCTTTAGTTTATAATCCACATAGATTGTTTGCCCATTCTCATTA
TCAAAAAAGATTGTTCGCCCATTATTTTCCCCTTTTATGTTTATGTTTGTATTTTCTCTTTCAG
GTTATCTTCAGAGTCCAATATCCTCTGGATTACTTTGATATCTCCATGGAGGACCAGAGAGATT
TTAAGCAGACAAGATATG
Conservation Information
Conserved circRNAs NA
PMCS 0.150632126
Functional Information
Coding potential Y
Potential coding position 43792060-43788408(+)
43788490-43792443(+)
43788418-43792123(-)
Potential amino acid sequence MKLPLRQKKLVDCRFSVHHMNHLSPWLSSESNILWITLISPWRTREILSRQDMLFLN*(+)
MSLKPQLRDPSKDEEDIKAIARLFSDMGDAYVELIATGSDESMLIVHALLEVASHPEFDIASMT
FNFWHNLQMILTERESYLACGNETSIETEKTRRLQVFRSSYESLVSLVIFRVQYPLDYFDISME
DQRDFKQTRYVISELIHYTAARNSGGVSSELALIQVIVPQVMSLKPQLRDPSKDEEDIKAIARL
FSDMGDAYVELIATGSDESMLIVHALLEVASHPEFDIASMTFNFWHNLQMILTERESYLACGNE
TSIETEKTRRLQVFRSSYESLVSLVIFRVQYPLDYFDISMEDQRDFKQTRYVISELIHYTAARN
SGGVSSELALIQVIVPQVMSLKPQLRDPSKDEEDIKAIARLFSDMGDAYVELIATGSDESMLIV
HALLEVASHPEFDIASMTFNFWHNLQMILTERESYLACGNETSIETEKTRRLQVFRSSYESLVS
LVIFRVQYPLDYFDISMEDQRDFKQTRYVISELIHYTAARNSGGVSSELALIQVIVPQVMSLKP
QLRDPSKDEEDIKAIARLFSDMGDAYVELIATGSDESMLIVHALLEVASHPEFDIASMTFNFWH
NLQMILTERESYLACGNETSIETEKTRRLQVFRSSYESLVSLVIFRVQYPLDYFDISMEDQRDF
KQTRY(+)
MYQFRNNISCLLKISLVLHGDIKVIQRILDSEDNQGDK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Yin et al., 2018