Detail information of Os06g0199100_circ_g.1


General Information
CircRNA Name Os06g0199100_circ_g.1
ID in PlantcircBase osa_circ_030086
Alias Os06circ05021
Organism Oryza sativa
Position chr6: 5033973-5034305  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os06g0199100
Parent gene annotation Helix-turn-helix, AraC type, subdomain 2 domain containing prote
in. (Os06t0199100-01)
Parent gene strand -
Alternative splicing Os06g0199100_circ_g.2
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os06t0199100-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCCTTCGCGAAAGCATAAAGGAGCGAGTTGTATGTGACTGCATCCGGCTGAAAACCCTTCTC
AACCAGCTCCTTAAACATCAGCTCAGCCTCCTGTGCcttccctgcctcagaaatcctatccatc
ttccctaaagaatcaaccaaaacagtataggtcacagcatctggagtgcagcctatagccctca
tctcatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCCCTGCCTCAGAAATCCTATCCATCTTCCCTAAAGAATCAACCAAAACAGTATAGGTCACA
GCATCTGGAGTGCAGCCTATAGCCCTCATCTCATCATACAACCCAAGCGCCAAGTCAAGCCTGC
CCATCTTTCCATACATATGAATCATGGTATTATAAGTAATCCCATCCTTCCTGAAACCAGCCTT
AACCAATTCCTCACACACACGCTCCACCCTCTCCACATCGCCTTCCTTCGCGAAAGCATAAAGG
AGCGAGTTGTATGTGACTGCATCCGGCTGAAAACCCTTCTCAACCAGCTCCTTAAACATCAGCT
CAGCCTCCTGTGC
Conservation Information
Conserved circRNAs NA
PMCS 0.320118193
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015