Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d016156_circ_g.2 |
ID in PlantcircBase | zma_circ_008687 |
Alias | zma_circ_0001895 |
Organism | Zea mays |
Position | chr5: 147537204-147538557 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d016156 |
Parent gene annotation |
Putative callose synthase 8 |
Parent gene strand | - |
Alternative splicing | Zm00001d016156_circ_g.1 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d016156_T002:3 Zm00001d016156_T003:4 Zm00001d016156_T004:3 Zm00001d016156_T005:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.056152887 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
147537777-147537206(-) 147537228-147538490(-) 147537242-147538516(-) |
Potential amino acid sequence |
MAWHGLESPTQLLDPIIFEDILSIFITNAVLRVIQVILDIAFSWRTKGTMRVDQILRFTIKLSL VVAWAIILPVFYANSQNYKACSTKRSKTFLGMFCLSKYMVVVALYLASNVVGMALFFVPAVTNY IETSTWRICNVLSWWCQVLCGSRLSKVPHGLENCASCVPLVSLHTSQQNEQLNSQLPPESSSTE NYLNSEAAEQRQQVLIIMAWHGLESPTQLLDPIIFEDILSIFITNAVLRVIQVILDIAFSWRTK GTMRVDQILRFTIKLSLVVAWAIILPVFYANSQNYKACSTKRSKTFLGMFCLSKYMVVVALYLA SNVVGMALFFVPAVTNYIETSTWRICNVLSWWCQVLCGSRLSKVPHGLENCASCVPLVSLHTSQ QNEQLNSQLPPESSSTENYLNSEAAEQRQQVLIIMAWHGLESPTQLLDPIIFEDILSIFITNAV LRVIQVILDIAFSWRTKGTMRVDQILRFTIKLSLVVAWAIILPVFYANSQNYKACSTKRSKTFL GMFCLSKYMVVVALYLASNVVGMALFFVPAVTNYIETSTWRICNVLSWWCQVLCGSRLSKVPHG LENCASCVPLVSLHTSQQNEQLNSQLPPESSSTENYLNSEAAEQRQQVLIIMAWHGLESPTQLL DPIIFEDILSIFITNAVLRVIQVILDIAFSWRTKGTMRVDQILRFTIKLSLVVAWAIILPVFYA NSQNYKACSTKRSKTFLGMFCLSKYMVVVALYLASNVVGMALFFVPAVTNYIETSTWRICNVLS WWCQ(-) MCCHGGVRFFADQDYQRCHMALKTVLAVFH*(-) MENLQCVVMVVSGSLRIKIIKGATWP*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |