Plant Circular RNA Database

Detail information of Os06g0128300_circ_g.4

			
						 General Information
					
						CircRNA Name
						Os06g0128300_circ_g.4
					
						ID in PlantcircBase
						osa_circ_029495
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 1496530-1498134  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os06g0128300						
					
						Parent gene annotation
						
							Mitochondrial half ABC (ATP-binding cassette) transporter, Iron 
homeostasis, Meristem maintenance (Os06t0128300-01);Similar to S
TA1 (STARIK 1); ATPase, coupled to transmembrane movement of sub
stances. (Os06t0128300-02);Similar to Mitochondrial half-ABC tra
nsporter. (Os06t0128300-03)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os06g0128300_circ_g.2 Os06g0128300_circ_g.3 Os06g0128300_circ_g.5 Os06g0128300_circ_g.6 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0128300-01:5
Os06t0128300-02:1
Os06t0128300-03:5

General Information
CircRNA Name	Os06g0128300_circ_g.4
ID in PlantcircBase	osa_circ_029495
Alias	NA
Organism	Oryza sativa
Position	chr6: 1496530-1498134 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os06g0128300
Parent gene annotation	Mitochondrial half ABC (ATP-binding cassette) transporter, Iron homeostasis, Meristem maintenance (Os06t0128300-01);Similar to S TA1 (STARIK 1); ATPase, coupled to transmembrane movement of sub stances. (Os06t0128300-02);Similar to Mitochondrial half-ABC tra nsporter. (Os06t0128300-03)
Parent gene strand	-
Alternative splicing	Os06g0128300_circ_g.2 Os06g0128300_circ_g.3 Os06g0128300_circ_g.5 Os06g0128300_circ_g.6
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0128300-01:5 Os06t0128300-02:1 Os06t0128300-03:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CAGCCAAGGTGAAAGCAATATAAGTAGCAACAGAAACTGAAGTAATCCAAGCAAAGGTGGAACC
AAATTTGTATGCAAGTATACTTGACACCATACCAATctcaagcaattgaaacatagacttcatg
tcaatcaggctttgcctagattctcgatagacacttccaaggaagttcagaggcaaagaaagtt
ggaataga

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTCAAGCAATTGAAACATAGACTTCATGTCAATCAGGCTTTGCCTAGATTCTCGATAGACACTT
CCAAGGAAGTTCAGAGGCAAAGAAAGTTGGAATAGAAGACCATTAACCATAACCTAGATATCAA
AATTTAATCAAATTAATAAAAATCAGTCAAAAATAAAGAAGAAAAGCAGAAAACTGGCAACATC
TGGAACTGATGGTTCATGGTTCAAAATTAACTATTGTTCCAAATCCACATAATTAGTTCATAAT
CAATGATCATTTGACACCCCTCGAAGTGGCATTTGATGATTTGCCACCGCTCTGCCTTTGATAC
ATGGACCCTGGGGCTACATGTCATAGAAACATGAGTGGCAAATAATCAATTTGACACTCTAAAG
GAGTAGCATATGATCAAAACTTTCCAGTTAGCCCTTTTCACTTAAACAACCTTCCTGACTATAA
AATAAACATAATATTGCAACAACATGCTTTGCCACTGTATGAAATGGATATGGTGCTAACCGAA
CATGTCAAAACGGGATAAGAAATACTTGCATCAAATAATATATAAGCGGATGTCATAAAAAATT
ACCAAATCACCGACAGTCAGAGCACCACTCATTACACCGTATGAACTCAAAACCATAGCCGTGG
ATAAAGCCGAGCTAAATATGATATTTTGTCCAAAGTTCAGGTAGGCAAGGCTACTTTGGGTTTT
CAGTGCAGCATCCTCATACTCTGACCAAATTGTGAAAAAGAAATAGTAATTAATAGATCAAATT
TTATAAACCAATTTACGATATATGCCAAAGCAACATGTCAGCTAGGATTCATCAGATTTACATA
GCATATAACTAAGCACTTGATAAATCAATGTGTACAAGCTCCTAATTGTTTGTGAAGATTGAAA
AAAAAAATCCAAGATGCAATATCAACCCTACTGTTTCTCATGGAAAACATTTTCCACATGTATT
TCATGCCTCAATATAAGTTTTTTTGGTAGTTTTTATAGAAGATGAAAATAACATTAAAACCAGT
GAATTAAATGCATAGAGTATATCTTTCAAAAAAAAGTGTATCGAGTAACATATGCATGTCTACA
CGTTAACAAGGTTTCTTCCCAGAATGAACATTATATATGTACTCACTCTTTAAATATTTGTCAT
ACTTCTCAACTTCAAATTGTTCATTGTTGAAGTACTTGACAGTCTGGCCCAATAAAGGAAGTTA
GAAAAAAAAAGGTTAATACAATTAGAATATGAAAGCTTAAGAACATAGACTAGATGCCAGGCCA
ATTGAAAATCATGGTATTACCTCATAGTTCAGAAGGGAGTCAACTGCCACTGTGCTAGAAGCGT
TATCAGCTTTATTCATGGCTGTCCTGAATTTGGTCCGCCACTGTCATAATAATGCATTACGAGT
CAAGGCATTAGTGACAAAAAAACAGCAAAAAATCTTGTTAGACTATGCATGGATGACAGACACG
GTCTGATAGAGCACATCATTCACACCTGCGTCACAGCCAAGGTGAAAGCAATATAAGTAGCAAC
AGAAACTGAAGTAATCCAAGCAAAGGTGGAACCAAATTTGTATGCAAGTATACTTGACACCATA
CCAAT
						
					

			
		

Sequences
Splice junction sequence	CAGCCAAGGTGAAAGCAATATAAGTAGCAACAGAAACTGAAGTAATCCAAGCAAAGGTGGAACC AAATTTGTATGCAAGTATACTTGACACCATACCAATctcaagcaattgaaacatagacttcatg tcaatcaggctttgcctagattctcgatagacacttccaaggaagttcagaggcaaagaaagtt ggaataga
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTCAAGCAATTGAAACATAGACTTCATGTCAATCAGGCTTTGCCTAGATTCTCGATAGACACTT CCAAGGAAGTTCAGAGGCAAAGAAAGTTGGAATAGAAGACCATTAACCATAACCTAGATATCAA AATTTAATCAAATTAATAAAAATCAGTCAAAAATAAAGAAGAAAAGCAGAAAACTGGCAACATC TGGAACTGATGGTTCATGGTTCAAAATTAACTATTGTTCCAAATCCACATAATTAGTTCATAAT CAATGATCATTTGACACCCCTCGAAGTGGCATTTGATGATTTGCCACCGCTCTGCCTTTGATAC ATGGACCCTGGGGCTACATGTCATAGAAACATGAGTGGCAAATAATCAATTTGACACTCTAAAG GAGTAGCATATGATCAAAACTTTCCAGTTAGCCCTTTTCACTTAAACAACCTTCCTGACTATAA AATAAACATAATATTGCAACAACATGCTTTGCCACTGTATGAAATGGATATGGTGCTAACCGAA CATGTCAAAACGGGATAAGAAATACTTGCATCAAATAATATATAAGCGGATGTCATAAAAAATT ACCAAATCACCGACAGTCAGAGCACCACTCATTACACCGTATGAACTCAAAACCATAGCCGTGG ATAAAGCCGAGCTAAATATGATATTTTGTCCAAAGTTCAGGTAGGCAAGGCTACTTTGGGTTTT CAGTGCAGCATCCTCATACTCTGACCAAATTGTGAAAAAGAAATAGTAATTAATAGATCAAATT TTATAAACCAATTTACGATATATGCCAAAGCAACATGTCAGCTAGGATTCATCAGATTTACATA GCATATAACTAAGCACTTGATAAATCAATGTGTACAAGCTCCTAATTGTTTGTGAAGATTGAAA AAAAAAATCCAAGATGCAATATCAACCCTACTGTTTCTCATGGAAAACATTTTCCACATGTATT TCATGCCTCAATATAAGTTTTTTTGGTAGTTTTTATAGAAGATGAAAATAACATTAAAACCAGT GAATTAAATGCATAGAGTATATCTTTCAAAAAAAAGTGTATCGAGTAACATATGCATGTCTACA CGTTAACAAGGTTTCTTCCCAGAATGAACATTATATATGTACTCACTCTTTAAATATTTGTCAT ACTTCTCAACTTCAAATTGTTCATTGTTGAAGTACTTGACAGTCTGGCCCAATAAAGGAAGTTA GAAAAAAAAAGGTTAATACAATTAGAATATGAAAGCTTAAGAACATAGACTAGATGCCAGGCCA ATTGAAAATCATGGTATTACCTCATAGTTCAGAAGGGAGTCAACTGCCACTGTGCTAGAAGCGT TATCAGCTTTATTCATGGCTGTCCTGAATTTGGTCCGCCACTGTCATAATAATGCATTACGAGT CAAGGCATTAGTGACAAAAAAACAGCAAAAAATCTTGTTAGACTATGCATGGATGACAGACACG GTCTGATAGAGCACATCATTCACACCTGCGTCACAGCCAAGGTGAAAGCAATATAAGTAGCAAC AGAAACTGAAGTAATCCAAGCAAAGGTGGAACCAAATTTGTATGCAAGTATACTTGACACCATA CCAAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.13991649

Conservation Information
Conserved circRNAs	NA
PMCS	0.13991649

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							1498130-1496532(-)
						
						Potential amino acid sequence
						
							MVSSILAYKFGSTFAWITSVSVATYIAFTLAVTQWRTKFRTAMNKADNASSTVAVDSLLNYETV
KYFNNEQFEVEKYDKYLKKYEDAALKTQSSLAYLNFGQNIIFSSALSTAMVLSSYGVMSGALTV
GDLVMVNGLLFQLSLPLNFLGSVYRESRQSLIDMKSMFQLLEIGMVSSILAYKFGSTFAWITSV
SVATYIAFTLAVTQWRTKFRTAMNKADNASSTVAVDSLLNYETVKYFNNEQFEVEKYDKYLKKY
EDAALKTQSSLAYLNFGQNIIFSSALSTAMVLSSYGVMSGALTVGDLVMVNGLLFQLSLPLNFL
GSVYRESRQSLIDMKSMFQLLEIGMVSSILAYKFGSTFAWITSVSVATYIAFTLAVTQWRTKFR
TAMNKADNASSTVAVDSLLNYETVKYFNNEQFEVEKYDKYLKKYEDAALKTQSSLAYLNFGQNI
IFSSALSTAMVLSSYGVMSGALTVGDLVMVNGLLFQLSLPLNFLGSVYRESRQSLIDMKSMFQL
LEIGMVSSILAYKFGSTFAWITSVSVATYIAFTLAVTQWRTKFRTAMNKADNASSTVAVDSLLN
YETVKYFNNEQFEVEKYDKYLKKYEDAALKTQSSLAYLNFGQNIIFSSALSTAMVLSSYGVMSG
ALTVGDLVMVNGLLFQLSLPLNFLGSVYRESRQSLIDMKSMFQLLE(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	1498130-1496532(-)
Potential amino acid sequence	MVSSILAYKFGSTFAWITSVSVATYIAFTLAVTQWRTKFRTAMNKADNASSTVAVDSLLNYETV KYFNNEQFEVEKYDKYLKKYEDAALKTQSSLAYLNFGQNIIFSSALSTAMVLSSYGVMSGALTV GDLVMVNGLLFQLSLPLNFLGSVYRESRQSLIDMKSMFQLLEIGMVSSILAYKFGSTFAWITSV SVATYIAFTLAVTQWRTKFRTAMNKADNASSTVAVDSLLNYETVKYFNNEQFEVEKYDKYLKKY EDAALKTQSSLAYLNFGQNIIFSSALSTAMVLSSYGVMSGALTVGDLVMVNGLLFQLSLPLNFL GSVYRESRQSLIDMKSMFQLLEIGMVSSILAYKFGSTFAWITSVSVATYIAFTLAVTQWRTKFR TAMNKADNASSTVAVDSLLNYETVKYFNNEQFEVEKYDKYLKKYEDAALKTQSSLAYLNFGQNI IFSSALSTAMVLSSYGVMSGALTVGDLVMVNGLLFQLSLPLNFLGSVYRESRQSLIDMKSMFQL LEIGMVSSILAYKFGSTFAWITSVSVATYIAFTLAVTQWRTKFRTAMNKADNASSTVAVDSLLN YETVKYFNNEQFEVEKYDKYLKKYEDAALKTQSSLAYLNFGQNIIFSSALSTAMVLSSYGVMSG ALTVGDLVMVNGLLFQLSLPLNFLGSVYRESRQSLIDMKSMFQLLE(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os06g0128300_circ_g.4

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