Detail information of Os05g0159200_circ_g.1


General Information
CircRNA Name Os05g0159200_circ_g.1
ID in PlantcircBase osa_circ_026721
Alias NA
Organism Oryza sativa
Position chr5: 3493438-3493962  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os05g0159200
Parent gene annotation Lipase, GDSL domain containing protein. (Os05t0159200-01)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os05t0159200-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAGATGGAGTGTGCATCACACCAGCCACATCGTTGTGGCCGATGTCCATCATGTATAGAGCGT
TCTCGAAGCCCTCCTTGCTCACTGGCCCTTTCTGCCcatatttggtgtggttggcgacgaagtc
gtacttgatggcaaacatgtcggtgtacacgacggtggcgttcttcagctgcaaccgcatttcg
tcgcagag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 417
Transcript exons: 3493438-3493699,3493808-3493962
CATATTTGGTGTGGTTGGCGACGAAGTCGTACTTGATGGCAAACATGTCGGTGTACACGACGGT
GGCGTTCTTCAGCTGCAACCGCATTTCGTCGCAGAGGTGGCTCAGCTTCTTGTTGAACTGCCGT
GCAGCCTTGTTGTAATTCGCCAGGCAGCCATGGGCGTCGTGCTCACCCTTCTCCTGCACCACCA
GTGCAGGTAGGCAGCCAAGGGCGCCGGTGCCATGTATCCAGAACTTCCTCGCGCCGTTGTCGTA
CAGAATCCGAATCGCGTCTTTGATCTCACTGACGATCTTGCTGAATTTTTTGTCCCAGTTATCA
GATGGAGTGTGCATCACACCAGCCACATCGTTGTGGCCGATGTCCATCATGTATAGAGCGTTCT
CGAAGCCCTCCTTGCTCACTGGCCCTTTCTGCC

Genomic sequence CATATTTGGTGTGGTTGGCGACGAAGTCGTACTTGATGGCAAACATGTCGGTGTACACGACGGT
GGCGTTCTTCAGCTGCAACCGCATTTCGTCGCAGAGGTGGCTCAGCTTCTTGTTGAACTGCCGT
GCAGCCTTGTTGTAATTCGCCAGGCAGCCATGGGCGTCGTGCTCACCCTTCTCCTGCACCACCA
GTGCAGGTAGGCAGCCAAGGGCGCCGGTGCCATGTATCCAGAACTTCCTCGCGCCGTTGTCGTA
CAGAATCTGTGGATGTTGGAAACAACCAAAGCTTCTGTCAGTGTAACTGCTTAAGAGTTACTAC
TACACTCGCAAACGGAAGTTTCAGATGCTGTATTGTAGTGTGTAATTTACCCGAATCGCGTCTT
TGATCTCACTGACGATCTTGCTGAATTTTTTGTCCCAGTTATCAGATGGAGTGTGCATCACACC
AGCCACATCGTTGTGGCCGATGTCCATCATGTATAGAGCGTTCTCGAAGCCCTCCTTGCTCACT
GGCCCTTTCTGCC
Conservation Information
Conserved circRNAs osi_circ_005983*
PMCS 0.330115254
Functional Information
Coding potential Y
Potential coding position 3493868-3493470(+)
3493906-3493577(+)
3493917-3493440(-)
Potential amino acid sequence MECASHQPHRCGRCPSCIERSRSPPCSLALSAHIWCGWRRSRT*(+)
MSIMYRAFSKPSLLTGPFCPYLVWLATKSYLMANMSVYTTVAFFSCNRISSQRWLSFLLNCRAA
LL*(+)
MMDIGHNDVAGVMHTPSDNWDKKFSKIVSEIKDAIRILYDNGARKFWIHGTGALGCLPALVVQE
KGEHDAHGCLANYNKAARQFNKKLSHLCDEMRLQLKNATVVYTDMFAIKYDFVANHTKYGQKGP
VSKEGFENALYMMDIGHNDVAGVMHTPSDNWDKKFSKIVSEIKDAIRILYDNGARKFWIHGTGA
LGCLPALVVQEKGEHDAHGCLANYNKAARQFNKKLSHLCDEMRLQLKNATVVYTDMFAIKYDFV
ANHTKYGQKGPVSKEGFENALYMMDIGHNDVAGVMHTPSDNWDKKFSKIVSEIKDAIRILYDNG
ARKFWIHGTGALGCLPALVVQEKGEHDAHGCLANYNKAARQFNKKLSHLCDEMRLQLKNATVVY
TDMFAIKYDFVANHTKYGQKGPVSKEGFENALYMMDIGHNDVAGVMHTPSDNWDKKFSKIVSEI
KDAIRILYDNGARKFWIHGTGALGCLPALVVQEKGEHDAHGCLANYNKAARQFNKKLSHLCDEM
RLQLKNATVVYTDMFAIKYDFVANHTKY(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017