Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os05g0159200_circ_g.1 |
ID in PlantcircBase | osa_circ_026721 |
Alias | NA |
Organism | Oryza sativa |
Position | chr5: 3493438-3493962 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os05g0159200 |
Parent gene annotation |
Lipase, GDSL domain containing protein. (Os05t0159200-01) |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os05t0159200-01:2 |
Conservation Information | |
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Conserved circRNAs | osi_circ_005983* |
PMCS | 0.330115254 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3493868-3493470(+) 3493906-3493577(+) 3493917-3493440(-) |
Potential amino acid sequence |
MECASHQPHRCGRCPSCIERSRSPPCSLALSAHIWCGWRRSRT*(+) MSIMYRAFSKPSLLTGPFCPYLVWLATKSYLMANMSVYTTVAFFSCNRISSQRWLSFLLNCRAA LL*(+) MMDIGHNDVAGVMHTPSDNWDKKFSKIVSEIKDAIRILYDNGARKFWIHGTGALGCLPALVVQE KGEHDAHGCLANYNKAARQFNKKLSHLCDEMRLQLKNATVVYTDMFAIKYDFVANHTKYGQKGP VSKEGFENALYMMDIGHNDVAGVMHTPSDNWDKKFSKIVSEIKDAIRILYDNGARKFWIHGTGA LGCLPALVVQEKGEHDAHGCLANYNKAARQFNKKLSHLCDEMRLQLKNATVVYTDMFAIKYDFV ANHTKYGQKGPVSKEGFENALYMMDIGHNDVAGVMHTPSDNWDKKFSKIVSEIKDAIRILYDNG ARKFWIHGTGALGCLPALVVQEKGEHDAHGCLANYNKAARQFNKKLSHLCDEMRLQLKNATVVY TDMFAIKYDFVANHTKYGQKGPVSKEGFENALYMMDIGHNDVAGVMHTPSDNWDKKFSKIVSEI KDAIRILYDNGARKFWIHGTGALGCLPALVVQEKGEHDAHGCLANYNKAARQFNKKLSHLCDEM RLQLKNATVVYTDMFAIKYDFVANHTKY(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |