Detail information of BGIOSGA001085_circ_igg.1


General Information
CircRNA Name BGIOSGA001085_circ_igg.1
ID in PlantcircBase osi_circ_010485
Alias Chr01:27999610_28003439(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 30003229-30006176  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   NN-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCACCATCCTCACATAAAAATCTAGTCGTGCTTTCAATACTGATAACAAGAGTACAGCACAC
TATCTCCAAGAAAATTAAATTAATCTAAGATTACGActagcagtgctcacgtctggtttgattg
ctgtaaccggaatgcatagatttggcaaagctgcttgttcgctaggtctatcattaggtgttaa
agctccac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTAGCAGTGCTCACGTCTGGTTTGATTGCTGTAACCGGAATGCATAGATTTGGCAAAGCTGCTT
GTTCGCTAGGTCTATCATTAGGTGTTAAAGCTCCACCAGTTTCCACGCCTGGAGAAAAGGAAAA
ACAAAAACCAAATCACCTCTTAGTGTTGCTTAGTGCTCAGAATATATGGCCTTCTTATCATCTG
AAAACTTAAACAGAGGATTATATTATGTTTCAGTTATCAATTAGAGAAATAACAAGAAATGCCG
CAAAATTCACGATGAGTCATTGAACTGGATATTATAAAAATCAAGTACCAGATGATACCAAGAT
TGAGTACCTGATTTAGGCCTATCATCTATGCTCCTTTTCTTGGGAGTTCCACTTGCCTGAATAA
TGATGAAATATATCAGCATGTTAAGTATAAGCTTGCTGGCTCAGAACATCTTCAATGGCATTAA
ATAACTACAGAACAATACCTTCTGGTTGTTTCCATCACTGAATCCTTCTAAGCTGCAATCTCCA
CTGCATTGGCAGCATCAGATGCACATGAAATCAGTTTGTCACTCATAATAGTTGTATATAAGTT
GAACTATCAATCTGGTTATCGTTTTCATTTTGTAAAATCCTGTATCACCTTGTTTTTTCACTGT
TGCCACTGCCAGTTGACATAGCCGCACCATCAATTTCCTTCATTTTCTTATTTGAACAGTTATC
CTTGCTGTTGACAGACTTTGCTGGCTCCATGCTCAATGGGCTCACCATCTTGATAAAAATATAA
GATAAACAATCAATAACAGAAGCATAATTAAGATACTAGCAAAACGATTAGCAATTCAGCACAG
AACGTTCACACAAGTGAAGCAAGAAAGACATTAAAGAAAAGAACAATTGAACAAATGATTTAAA
AATACATATATACTTCCACAGAAGAAAAAAAAAAATCCAGCTTCCTTCTACAGAAAAAATGGCA
ATATATGAATGAATTTATTTTCATGTAGAGATAATTCGTCTGCAAGGATAGGTTTTCCAAGTTC
CAACTACATATCATGAATACTTCGAACGGCAGAAATCATTCGTGTTAGTTCTGCTCATAGAGAA
GTTTCCATGTTAACATGGCTTTATGCAAGCATTTTAACAAATTGGATATCGCTTTAATTCCAAA
GCGTGATAGTTGACTCAAATCCATGGTGCCTTCCATGTTTAGTTAAATGCAATGTTCTGAAAAA
TAGATAGGTGAACAAAATGAAATGCTTACTAGGGGCATGAACGGATGTGAAAAAGCTCCACCAG
GAGGATAAATTGCGGCATATGGCTTCCCAAAAGCGGATGGCACCAGAGGCTGTAGAGGCACAGG
GAAATAACTTAGAACTCTTAAAGATAAGAATGACACCTGATACATGGAGAGTAAAGTCAAAAAC
CTGAGGACCCCAGATAAATGGAGGAGGGGTATGACCAGCGGCTATTCCAGGGCTAAAAAATGTT
GGTGGCAAGATCCCTGGGCCGTAATATGCCTGTGTTGATTATGATACCTTAAATTTAGTTACTC
AGTTCAAAGGAAAATCCAAACTTCAGTTATCAGGAAAATATAGATTGTCAGACACCTAACCTGC
ATATTTGACCAATCAAGGTATGGACTAAGGGCTGGATGATCCTGCAAAGTAATACAGTTGCTAC
TTAGGCACCTTTAAGGATTCCACCCCTTGTCAATAATGTGGCTAATTGACAAAATCATGCTTCG
CAGCTGTTTGATGCAGCCCTAGCACATCTAAAACCTCAAAGCGGATTTATGTTGTCAAATAAAA
GAAGAAATGCCAATAATCAATTTGACATCTTGCTCGTGCAATGTTGTCTGTGCCCATATTTGGC
CTTGGTTATCTACTTATATGCGTTTACCTTAGGGGGCGATGGTGCTTTCCCCATCTTCTGAGTA
ACTACAGCTTCGTCATTTCCCATGACTTTTTATGAGTTCCTGCATATTTTCATCATACAGATTG
GTCATATGCTAAACCATATCATAAGTACTGAAAATAGTCACACAAAAAAGTATGTTTCAGTAAA
AAATATAATTCACTAAATGCACAGATATGAAACTCTTGCAGGCCCATAGATATCGCACAATCAT
GTACAAAAACCACTAGACACACCTAGCTTGTGCAGGCATTCCTGTACAGCAATCCGACACTTAA
AATTCCTCCTTTCCAGTGAGCCATCACGGCGTCACTGCTTCATCGTCTTACTCATCTCTAGTCT
CTCCTACGCCATCCTCCTTCTTCGCCTCTAGCGGGATTGGGTGACATAGGGTAGACATGTCACA
AGGTGACATAGGGTGAATCTTGGCCCTCCAAAACAAATCCAACGGCTGAGACTCGTCCACGTCA
TCACGAGTAAAAATTTTACTCGCAGATTTACTCAGGAGTAAACATTTTACTAGGAGTAAAATTC
CTGGAGTAAAAGTTTTACTGGGAATAAAATTTTTACTCATGATGACGTGGACGAATCTAAGCTG
TTGGATAAGTGGGGGAGGGTCGAGATTCACCCTATGTCACCCAATCTGAATCCCTACTCCCCCT
CCCCCCACATCCCACTCCCAACACCAACACCACCGTATACACCCCCTTGCCAACCCCCGCCTAC
CACCAGCGTAGGGCGCCACCTCTGCCCTAGGCAACTACCACACCAACCCACACTAATATACATT
GTTGTGAGAGATTAGTGTGCCGGAGAAAGAACCGGAGTACCAATCCCTGCAGCAAATTGGAGGG
ATGGAAATTCAAGCCCTCTAGCAATTTTCAAAAATATATAGTACAGAAATAAACTGGCCGTAGC
TATGTTCAGTCATTTGACATGGTCCAGAAGTGCTTCACCATCCTCACATAAAAATCTAGTCGTG
CTTTCAATACTGATAACAAGAGTACAGCACACTATCTCCAAGAAAATTAAATTAATCTAAGATT
ACGA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021