Detail information of BGIOSGA015740_circ_g.1


General Information
CircRNA Name BGIOSGA015740_circ_g.1
ID in PlantcircBase osi_circ_014347
Alias Chr04:206182_207217(MH63RS2), Chr04:210817_211851(ZS97RS2), Chr04:206182_207217(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 186344-187379  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2
Parent gene BGIOSGA015740
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015740_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-CA
Number of exons covered BGIOSGA015740-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTGATGTGAAAAGTTTACCTCAGTATATTTTCCTATTTTCACCGATCCCAGTATATTGTTGTT
GTCAGGAGACACCAAATTAGGGACACAGAGCGGTGAccttattcgttgagaagcaacatagtca
gtcgaagtgaatgatccaaaaagtgccaaacttgttcgagtgtctaacgtaaattcagttcgtt
ttctggag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTATTCGTTGAGAAGCAACATAGTCAGTCGAAGTGAATGATCCAAAAAGTGCCAAACTTGTT
CGAGTGTCTAACGTAAATTCAGTTCGTTTTCTGGAGGAAATTAGCAGAAGATCATTACTACAGA
ACAGCAAACACACTATTTCCTGAAGGAAATTTCAAAAATTATATCTCAGAACAACATGTAGAAT
ATGATATTCATTAAAATAGATGTGTACCCTGCTCTGTAATGAGGATTCAAATCACAGAATGATT
CTGTGCCAATTGAGACAACATGGGCAGTACGCATCTCCTCAAGTTCTGGCAGTATTATTTCTTC
TATCTTTAAACACATAAATAAAATCTTATCAACTTAGATGACAAAGAAAATTTTTACAGGAACA
CATCATTATAATTGGCTCTCATTCAAACATTTCGTAGCTGGAAAAAGTTTAAGCGTAACTCATA
CAACTCATTAGCTTCCTAAAAGCTCCAGATAAAGCAGCTCAGTAATCAATTATAAACCAATTAT
GATTTACAGAATTTAAAAAATAAACATATCATTTATATTTCACAGTTATTTCAACATATCCATT
ATCGATAATGCAATTGATGCACATAGAAATATCTGTACACATTGGAATGTCACATCAGTAAGGA
AAAAACAGAAAACCACACAATAAAAAATGTTGCCATTAATAGAAGAAATTGCACAACCAAAAGC
AAAGGCCTATTGTTGCTGCTATATATAAACTGTGATAATTAACTAGTAGAATACTGTACTCCTA
TTGTCTAAGGTATGTTAAATAGTGATGATCTTACTTGACATCCGAAGCTGCTGCAAAGAAGGTT
AAGTGCATCCTCACATGTATTAGAGATATCACGATCGGAGACATCATGAAACCACTACAAAAAC
CAGTGTAATTTAGAACAGGCTCATGCATACCAAAATGATGCTTGATGTGAAAAGTTTACCTCAG
TATATTTTCCTATTTTCACCGATCCCAGTATATTGTTGTTGTCAGGAGACACCAAATTAGGGAC
ACAGAGCGGTGA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021