Detail information of BGIOSGA033068_circ_g.1


General Information
CircRNA Name BGIOSGA033068_circ_g.1
ID in PlantcircBase osi_circ_008452
Alias Chr10:18729681_18730441(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 15207436-15208196  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA033068
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033068_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA033068-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCTGCTGGAAAACCTCTTATGAAGCTTGTTGCTGTTGACTGGTTTAAAGATATGAAACGAATG
GATCATGTTGCTAGAAGAAAAGGCTGTGCAGTACAAgggctcagggaatggttttcacaaagtg
atgaaaatctaatacttcctaggattcctgttatggccaatatggctccgcctgtttcttctaa
gaaaggga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGCTCAGGGAATGGTTTTCACAAAGTGATGAAAATCTAATACTTCCTAGGATTCCTGTTATGG
CCAATATGGCTCCGCCTGTTTCTTCTAAGAAAGGGAGAACAACACAAGATAATACTATGCAAAC
CGGCCTTCAAATGGACCAAAGTAGACAATCTACAATGCTTGATGAAGAATCTGATGAAGATGAA
GATCAAATACCTGAATCTGAGCAAGAGGTTGATGAATTACTCATAGTGTTTCCAATTTACTCAC
CTTAAATTCTAAGTAAGATTATGTTTACTGTGCAGACATCAACTCATGGCCATGATGCACCTGT
TAAACTGTCAGGTATATTGTGATTCCATTTTCCTCGAGACTTTTATAACATGATAGGAGTCTAG
TTTGCATATGATATTAGTCTTCATTAACTGTAGTGCTGGATGAGGAGGATTCAGATCAGATTGA
TGTTTCTGGATTTTCTGGAAATTTACGCCGGGATGATCGCGACAACACTCGTGATTGCTGGAGA
ATGTCTGATGGAAATAACTTCAGAGTGCGAAGCAAGACTTTTATATATGATAAAAGCAAGGTTG
TAATCTTCCCTAGGAATACTGTGGAATCTTTTTGGCTGTTTTTCAGGCTCTCTTATTTGTTTTG
TTAAACTATTTATTCATAGATTCCTGCTGGAAAACCTCTTATGAAGCTTGTTGCTGTTGACTGG
TTTAAAGATATGAAACGAATGGATCATGTTGCTAGAAGAAAAGGCTGTGCAGTACAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021